puc-header

Single-Cell Mapping of Progressive Fetal-to-Adult Transition in Human Hematopoiesis

85 Pages Posted: 16 Apr 2020 Publication Status: Review Complete

See all articles by Daniel Bunis

Daniel Bunis

University of California, San Francisco (UCSF) - The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research

Yelena Bronevetsky

University of California, San Francisco (UCSF) - Division of Experimental Medicine

Elisabeth Krow-Lucal

University of California, San Francisco (UCSF) - Division of Experimental Medicine

Nirav R. Bhakta

University of California, San Francisco (UCSF) - Division of Pulmonary, Critical Care, Allergy and Sleep Medicine

Charles C. Kim

University of California, San Francisco (UCSF) - Division of Experimental Medicine

Srilaxmi Nerella

University of California, San Francisco (UCSF) - Division of Pulmonary, Critical Care, Allergy and Sleep Medicine

Norman Jones

University of California, San Francisco (UCSF) - The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research

Ventura F. Mendoza

University of California, San Francisco (UCSF) - The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research

Yvonne J. Bryson

University of California, Los Angeles (UCLA) - Mattel Children’s Hospital UCLA

James E. Gern

University of Wisconsin-Madison - Department of Pediatrics

Rachel L. Rutishauser

University of California, San Francisco (UCSF) - Department of Medicine

Chun Jimmie Ye

University of California, San Francisco (UCSF) - Institute for Computational Health Sciences

Marina Sirota

University of California, San Francisco (UCSF) - Institute for Computational Health Sciences

Joseph M. McCune

University of California, San Francisco (UCSF) - Division of Experimental Medicine

Trevor D. Burt

University of California, San Francisco (UCSF) - The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research

More...

Abstract

Whereas the human fetal immune system is poised to generate immune tolerance and suppress inflammation in utero, an adult-like immune system emerges to orchestrate anti-pathogen immune responses in post-natal life. It has been posited that cells of the adult immune system arise as a discrete ontological “layer” of hematopoietic stem-progenitor cells (HSPCs) and their progeny; evidence supporting this model in humans has, however, been inconclusive.  Here, we combine bulk and single-cell transcriptional profiling of lymphoid, myeloid, and HSPCs from fetal, perinatal, and adult developmental stages to demonstrate that the fetal-to-adult transition occurs progressively along a continuum of maturity — with a substantial degree of interindividual variation at the time of birth — rather than via a transition between discrete waves. These findings have important implications in the design of strategies for prophylaxis against infection in the newborn, and for the use of umbilical cord blood (UCB) in the setting of transplantation.

Keywords: Human Immune Development, Newborn Immune Development, Single-cell RNAseq, Hematopoietic Ontogeny, Hematopoietic Stem Cells, Hematopoietic Stem & Progenitor Cells, Naive T cells, Monocytes

Suggested Citation

Bunis, Daniel and Bronevetsky, Yelena and Krow-Lucal, Elisabeth and Bhakta, Nirav R. and Kim, Charles C. and Nerella, Srilaxmi and Jones, Norman and Mendoza, Ventura F. and Bryson, Yvonne J. and Gern, James E. and Rutishauser, Rachel L. and Ye, Chun Jimmie and Sirota, Marina and McCune, Joseph M. and Burt, Trevor D., Single-Cell Mapping of Progressive Fetal-to-Adult Transition in Human Hematopoiesis. Available at SSRN: https://ssrn.com/abstract=3569532 or http://dx.doi.org/10.2139/ssrn.3569532
This version of the paper has not been formally peer reviewed.

Daniel Bunis

University of California, San Francisco (UCSF) - The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research ( email )

San Francisco, CA
United States

Yelena Bronevetsky

University of California, San Francisco (UCSF) - Division of Experimental Medicine

United States

Elisabeth Krow-Lucal

University of California, San Francisco (UCSF) - Division of Experimental Medicine

United States

Nirav R. Bhakta

University of California, San Francisco (UCSF) - Division of Pulmonary, Critical Care, Allergy and Sleep Medicine

San Francisco General Hospital
Box 2911
San Francisco, CA
United States

Charles C. Kim

University of California, San Francisco (UCSF) - Division of Experimental Medicine

United States

Srilaxmi Nerella

University of California, San Francisco (UCSF) - Division of Pulmonary, Critical Care, Allergy and Sleep Medicine

San Francisco General Hospital
Box 2911
San Francisco, CA
United States

Norman Jones

University of California, San Francisco (UCSF) - The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research

San Francisco, CA
United States

Ventura F. Mendoza

University of California, San Francisco (UCSF) - The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research

San Francisco, CA
United States

Yvonne J. Bryson

University of California, Los Angeles (UCLA) - Mattel Children’s Hospital UCLA

Los Angeles, CA 90095
United States

James E. Gern

University of Wisconsin-Madison - Department of Pediatrics

Madison, WI
United States

Rachel L. Rutishauser

University of California, San Francisco (UCSF) - Department of Medicine ( email )

San Francisco, CA
United States

Chun Jimmie Ye

University of California, San Francisco (UCSF) - Institute for Computational Health Sciences

Third Avenue and Parnassus
San Francisco, CA 94143
United States

Marina Sirota

University of California, San Francisco (UCSF) - Institute for Computational Health Sciences ( email )

Third Avenue and Parnassus
San Francisco, CA 94143
United States

Joseph M. Mccune

University of California, San Francisco (UCSF) - Division of Experimental Medicine ( email )

United States

Trevor D. Burt (Contact Author)

University of California, San Francisco (UCSF) - The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research ( email )

San Francisco, CA
United States

Click here to go to Cell.com

Paper statistics

Downloads
74
Abstract Views
1,114
PlumX Metrics