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Annual Review of Biomedical Data Science

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Viewing: 1 - 44 of 44 papers

1.

Analytic and Translational Genetics

Annual Review of Biomedical Data Science, Vol. 3, pp. 217-241, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Masssachusetts Institute of Technology and Harvard University - Broad Institute and Harvard University - Massachusetts General Hospital
2.

Deciphering Cell Fate Decision by Integrated Single-Cell Sequencing Analysis

Annual Review of Biomedical Data Science, Vol. 3, pp. 1-22, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Max Planck Institute of Immunobiology and Epigenetics and Max Planck Institute of Immunobiology and Epigenetics
3.

Infectious Disease Research in the Era of Big Data

Annual Review of Biomedical Data Science, Vol. 3, pp. 43-59, 2020
Posted: 31 Jul 2020
Accepted Paper Series
University of Virginia - Department of Biomedical Engineering
4.

Analysis of MRI Data in Diagnostic Neuroradiology

Annual Review of Biomedical Data Science, Vol. 3, pp. 365-390, 2020
Posted: 31 Jul 2020
Accepted Paper Series
University of Pennsylvania - Perelman School of Medicine, University of Pennsylvania - Perelman School of Medicine and University of Pennsylvania - Perelman School of Medicine
5.

Computational Approaches for Unraveling the Effects of Variation in the Human Genome and Microbiome

Annual Review of Biomedical Data Science, Vol. 3, pp. 411-432, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Rutgers University, New Brunswick, Rutgers University, New Brunswick, Rutgers University, New Brunswick, Rutgers University, New Brunswick, Rutgers University, New Brunswick, Rutgers University, New Brunswick and Rutgers University, New Brunswick
6.

Computational Methods for Single-Particle Electron Cryomicroscopy

Annual Review of Biomedical Data Science, Vol. 3, pp. 163-190, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Princeton University - Department of Mathematics and Yale University
7.

Identifying Regulatory Elements via Deep Learning

Annual Review of Biomedical Data Science, Vol. 3, pp. 315-338, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Ben-Gurion University of the Negev, Ben-Gurion University of the Negev and Ben-Gurion University of the Negev
8.

Immunoinformatics: Predicting Peptide–MHC Binding

Annual Review of Biomedical Data Science, Vol. 3, pp. 191-215, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Technical University of Denmark - Department of Health Technology, Universidad Nacional de San Martín (UNSAM), La Jolla Institute for Allergy and Immunology (LIAI) - Division of Vaccine Discovery and University of Copenhagen - Faculty of Health and Medical Sciences
9.

Mining Social Media Data for Biomedical Signals and Health-Related Behavior

Annual Review of Biomedical Data Science, Vol. 3, pp. 433-458, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Indiana University Bloomington - School of Informatics and Computing, Indiana University Bloomington - School of Informatics and Computing, Indiana University Bloomington - School of Informatics and Computing and Indiana University Bloomington - School of Informatics and Computing
10.

Mobile Health Monitoring of Cardiac Status

Annual Review of Biomedical Data Science, Vol. 3, pp. 243-263, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Stanford University - Department of Medicine, Stanford University - Department of Medicine, Stanford University - Department of Biomedical Data Science and Stanford University - Division of Cardiology
11.

Statistical Methods in Genome-Wide Association Studies

Annual Review of Biomedical Data Science, Vol. 3, pp. 265-288, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Yale University - Department of Biostatistics and Yale University - Department of Biostatistics
12.

Biomedical Data Science and Informatics Challenges to Implementing Pharmacogenomics with Electronic Health Records

Annual Review of Biomedical Data Science, Vol. 3, pp. 289-314, 2020
Posted: 31 Jul 2020
Accepted Paper Series
St Jude Children’s Research Hospital - Department of Pharmaceutical Sciences, University of Michigan, Mayo Clinic and Mayo Clinic
13.

Computational Methods for Analysis of Large-Scale CRISPR Screens

Annual Review of Biomedical Data Science, Vol. 3, pp. 137-162, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Stanford University, Stanford University, Stanford University, Stanford University - Department of Statistics and Stanford University
14.

Computational Methods for Single-Cell RNA Sequencing

Annual Review of Biomedical Data Science, Vol. 3, pp. 339-364, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Massachusetts Institute of Technology (MIT), Massachusetts Institute of Technology (MIT), Harvard University - Ragon Institute of MGH, MIT and Harvard, Masssachusetts Institute of Technology and Harvard University - Broad Institute, Massachusetts Institute of Technology (MIT) and Massachusetts Institute of Technology (MIT)
15.

Data Integration for Immunology

Annual Review of Biomedical Data Science, Vol. 3, pp. 113-136, 2020
Posted: 31 Jul 2020
Accepted Paper Series
University of California, San Francisco (UCSF), University of California, San Francisco (UCSF) - Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, University of California, San Francisco (UCSF) and University of California, San Francisco (UCSF) - Institute for Computational Health Sciences
16.

Knowledge-Based Biomedical Data Science

Annual Review of Biomedical Data Science, Vol. 3, pp. 23-41, 2020
Posted: 31 Jul 2020
Accepted Paper Series
University of Colorado at Denver, University of Colorado at Boulder, University of Colorado at Denver and University of Colorado at Denver
17.

Protein–Protein Interaction Methods and Protein Phase Separation

Annual Review of Biomedical Data Science, Vol. 3, pp. 89-112, 2020
Posted: 31 Jul 2020
Accepted Paper Series
University of Bologna - Department of Pharmacy and Biotechnology, University of Bologna - Department of Pharmacy and Biotechnology and University of Bologna - Department of Pharmacy and Biotechnology
18.

Spatial Metabolomics and Imaging Mass Spectrometry in the Age of Artificial Intelligence

Annual Review of Biomedical Data Science, Vol. 3, pp. 61-87, 2020
Posted: 31 Jul 2020
Accepted Paper Series
University of California, San Diego (UCSD), Skaggs School of Pharmacy and Pharmaceutical Sciences, Collaborative Mass Spectrometry Innovation Center
19.

Supercomputing and Secure Cloud Infrastructures in Biology and Medicine

Annual Review of Biomedical Data Science, Vol. 3, pp. 391-410, 2020
Posted: 31 Jul 2020
Accepted Paper Series
Danish National Genome Center, Danish National Genome Center, University of Copenhagen and Danish National Genome Center
20.

Biomolecular Data Resources: Bioinformatics Infrastructure for Biomedical Data Science

Annual Review of Biomedical Data Science, Vol. 2, pp. 199-222, 2019
Posted: 25 Jul 2019
Accepted Paper Series
European Bioinformatics Institute - European Molecular Biology Laboratory, European Bioinformatics Institute - European Molecular Biology Laboratory and European Bioinformatics Institute - European Molecular Biology Laboratory
21.

Discovering Pathway and Cell Type Signatures in Transcriptomic Compendia with Machine Learning

Annual Review of Biomedical Data Science, Vol. 2, pp. 1-17, 2019
Posted: 25 Jul 2019
Accepted Paper Series
University of Pennsylvania - Genomics and Computational Biology Graduate Group and Alex's Lemonade Stand Foundation - Childhood Cancer Data Lab
22.

Imaging, Visualization, and Computation in Developmental Biology

Annual Review of Biomedical Data Science, Vol. 2, pp. 223-251, 2019
Posted: 25 Jul 2019
Accepted Paper Series
University of California, Los Angeles (UCLA) - Department of Biomedical Engineering, University of California, Los Angeles (UCLA) - Department of Biomedical Engineering and University of California, Los Angeles (UCLA) - Translational Imaging Center
23.

Integrating Imaging and Omics: Computational Methods and Challenges

Annual Review of Biomedical Data Science, Vol. 2, pp. 175-197, 2019
Posted: 25 Jul 2019
Accepted Paper Series
European Molecular Biology Laboratory (EMBL)- Germany - Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL)- Germany - Cell Biology and Biophysics Unit and European Molecular Biology Laboratory (EMBL)- Germany - Cell Biology and Biophysics Unit
24.

Molecular Heterogeneity in Large-Scale Biological Data: Techniques and Applications

Annual Review of Biomedical Data Science, Vol. 2, pp. 39-67, 2019
Posted: 25 Jul 2019
Accepted Paper Series
University of California, Los Angeles (UCLA) - Department of Molecular and Computational Biology, Stanford University - Department of Statistics, University of California, Los Angeles (UCLA) - Department of Molecular and Computational Biology and University of California, Los Angeles (UCLA) - Department of Molecular and Computational Biology
25.

Computational and Informatic Advances for Reproducible Data Analysis in Neuroimaging

Annual Review of Biomedical Data Science, Vol. 2, pp. 119-138, 2019
Posted: 25 Jul 2019
Accepted Paper Series
Stanford University - Department of Psychology, Stanford University - Department of Psychology and Parietal Team, Inria and NeuroSpin/CEA (Atomic Energy Commission)
26.

Connectivity Mapping: Methods and Applications

Annual Review of Biomedical Data Science, Vol. 2, pp. 69-92, 2019
Posted: 25 Jul 2019
Accepted Paper Series
Mount Sinai Health System - Mount Sinai Center for Bioinformatics, Mount Sinai Health System - Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai - Department of Pharmacological Sciences, Mount Sinai Health System - Mount Sinai Center for Bioinformatics, Mount Sinai Health System - Mount Sinai Center for Bioinformatics, Mount Sinai Health System - Department of Pharmacological Sciences and Mount Sinai Health System - Department of Pharmacological Sciences
27.

Genomic Data Compression

Annual Review of Biomedical Data Science, Vol. 2, pp. 19-37, 2019
Posted: 25 Jul 2019
Accepted Paper Series
University of Illinois at Urbana-Champaign - Carl R. Woese Institute for Genomic Biology, Stanford University - Department of Electrical Engineering, Stanford University - Department of Electrical Engineering and University of Illinois at Urbana-Champaign - Department of Electrical and Computer Engineering
28.

RNA Sequencing Data: Hitchhiker's Guide to Expression Analysis

Annual Review of Biomedical Data Science, Vol. 2, pp. 139-173, 2019
Posted: 25 Jul 2019
Accepted Paper Series
Ghent University - Bioinformatics Institute Ghent, University of Zurich - Institute of Molecular Life Sciences, University of Zurich - Institute of Molecular Life Sciences, University of Zurich - Institute of Molecular Life Sciences, Ghent University - Bioinformatics Institute Ghent, University of North Carolina (UNC) at Chapel Hill - Department of Biostatistics, State University of New York (SUNY) - Department of Computer Science and University of Zurich - Institute of Molecular Life Sciences
29.

Scientific Discovery Games for Biomedical Research

Annual Review of Biomedical Data Science, Vol. 2, pp. 253-279, 2019
Posted: 25 Jul 2019
Accepted Paper Series
Stanford University - Department of Biochemistry, Stanford University - Department of Learning Sciences, Stanford University - Department of Bioengineering and Stanford University - Department of Bioengineering
30.

Sketching and Sublinear Data Structures in Genomics

Annual Review of Biomedical Data Science, Vol. 2, pp. 93-118, 2019
Posted: 25 Jul 2019
Accepted Paper Series
Carnegie Mellon University - Computational Biology Department, Johns Hopkins University - Department of Computer Science, State University of New York (SUNY) - Department of Computer Science and Carnegie Mellon University - Computational Biology Department
31.

A Census of Disease Ontologies

Annual Review of Biomedical Data Science, Vol. 1, pp. 305-331, 2018
Posted: 06 Feb 2019
Accepted Paper Series
Oregon Health and Science University, Oregon Health and Science University, Oregon Health and Science University, University of California, Berkeley - Lawrence Berkeley National Laboratory (Berkeley Lab), The Jackson Laboratory and Johns Hopkins University
32.

Computational Methods for Understanding Mass Spectrometry–Based Shotgun Proteomics Data

Annual Review of Biomedical Data Science, Vol. 1, pp. 207-234, 2018
Posted: 06 Feb 2019
Accepted Paper Series
Max Planck Society for the Advancement of the Sciences - Max Planck Institute of Biochemistry, Max Planck Society for the Advancement of the Sciences - Max Planck Institute of Biochemistry and Max Planck Society for the Advancement of the Sciences - Max Planck Institute of Biochemistry
33.

Data Science Issues in Studying Protein–RNA Interactions with CLIP Technologies

Annual Review of Biomedical Data Science, Vol. 1, pp. 235-261, 2018
Posted: 06 Feb 2019
Accepted Paper Series
Francis Crick Institute, Francis Crick Institute, Francis Crick Institute, Francis Crick Institute and University of Cambridge - MRC Laboratory of Molecular Biology
34.

Large-Scale Analysis of Genetic and Clinical Patient Data

Annual Review of Biomedical Data Science, Vol. 1, pp. 263-274, 2018
Posted: 06 Feb 2019
Accepted Paper Series
Pennsylvania State University
35.

Alignment-Free Sequence Analysis and Applications

Annual Review of Biomedical Data Science, Vol. 1, pp. 93-114, 2018
Posted: 06 Feb 2019
Accepted Paper Series
University of Southern California, University of Southern California, University of Southern California, University of Southern California, Xiamen University, University of Oxford and University of Southern California
36.

Big Data Approaches for Modeling Response and Resistance to Cancer Drugs

Annual Review of Biomedical Data Science, Vol. 1, pp. 1-27, 2018
Posted: 06 Feb 2019
Accepted Paper Series
Harvard University - T.H. Chan School of Public Health, Masssachusetts Institute of Technology and Harvard University - Broad Institute and Dana-Farber/Harvard Cancer Center - Center for Functional Cancer Epigenetics
37.

From Tissues to Cell Types and Back: Single-Cell Gene Expression Analysis of Tissue Architecture

Annual Review of Biomedical Data Science, Vol. 1, pp. 29-51, 2018
Posted: 06 Feb 2019
Accepted Paper Series
Wellcome Genome Campus, Wellcome Genome Campus - Wellcome Sanger Institute and Wellcome Genome Campus
38.

Network Analysis as a Grand Unifier in Biomedical Data Science

Annual Review of Biomedical Data Science, Vol. 1, pp. 153-180, 2018
Posted: 06 Feb 2019
Accepted Paper Series
Yale University - Molecular Biophysics and Biochemistry, Yale University - Molecular Biophysics and Biochemistry, Yale University, Yale University - Molecular Biophysics and Biochemistry, Yale University, Yale University, Yale University - Molecular Biophysics and Biochemistry, Yale University - Molecular Biophysics and Biochemistry and Yale University - Molecular Biophysics and Biochemistry
39.

Opportunities and Challenges of Whole-Cell and -Tissue Simulations of the Outer Retina in Health and Disease

Annual Review of Biomedical Data Science, Vol. 1, pp. 131-152, 2018
Posted: 06 Feb 2019
Accepted Paper Series
University College London, Barcelona Institute of Science and Technology (BIST) - Centre for Genomic Regulation (CRG) and Tulane University, Department of Political Science
40.

Privacy Policy and Technology in Biomedical Data Science

Annual Review of Biomedical Data Science, Vol. 1, pp. 115-129, 2018
Posted: 06 Feb 2019
Accepted Paper Series
University of California, San Diego (UCSD) - School of Medicine, University of California, San Diego (UCSD) - School of Medicine, University of California, San Diego (UCSD), University of California, San Diego (UCSD) and University of California, San Diego (UCSD)
41.

Visualization of Biomedical Data

Annual Review of Biomedical Data Science, Vol. 1, pp. 275-304, 2018
Posted: 06 Feb 2019
Accepted Paper Series
Government of the Commonwealth of Australia - CSIRO (Commonwealth Scientific and Industrial Research Organisation), Garvan Institute of Medical Research, Garvan Institute of Medical Research, University of Technology Sydney (UTS), Queensland University of Technology, University of New South Wales (UNSW) - School of Computer Science & Engineering, Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM GmbH) - German Cancer Research Center (DKFZ), European Bioinformatics Institute, Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM GmbH) - German Cancer Research Center (DKFZ), University of Dundee - School of Life Sciences, Government of the Commonwealth of Australia - CSIRO (Commonwealth Scientific and Industrial Research Organisation) and University of Dundee - School of Life Sciences
42.

Advances in Electronic Phenotyping: From Rule-Based Definitions to Machine Learning Models

Annual Review of Biomedical Data Science, Vol. 1, pp. 53-68, 2018
Posted: 06 Feb 2019
Accepted Paper Series
Stanford University - Stanford Center for Biomedical Ethics (SCBE), Stanford University - Stanford Center for Biomedical Ethics (SCBE), Stanford University - Stanford Center for Biomedical Ethics (SCBE) and Stanford University - Center for Biomedical Informatics Research
43.

Deep Learning in Biomedical Data Science

Annual Review of Biomedical Data Science, Vol. 1, pp. 181-205, 2018
Posted: 06 Feb 2019
Accepted Paper Series
University of California, Irvine - School of Information and Computer Science
44.

Defining Phenotypes from Clinical Data to Drive Genomic Research

Annual Review of Biomedical Data Science, Vol. 1, pp. 69-92, 2018
Posted: 06 Feb 2019
Accepted Paper Series
Vanderbilt University - Medical Center, Vanderbilt University - Medical Center, Vanderbilt University - Medical Center and Vanderbilt University - Medical Center