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Tieliu Shi

East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology

China

SCHOLARLY PAPERS

8

DOWNLOADS

449

TOTAL CITATIONS

2

Scholarly Papers (8)

1.

Diversity and Distinctive Traits of the Global RNA Virome in Urban Environments

Number of pages: 35 Posted: 24 Jun 2024
East China Normal University (ECNU) - Institute of Biomedical Sciences, East China Normal University (ECNU) - Institute of Biomedical Sciences, Cornell University - Weill Cornell Medicine, East China Normal University (ECNU) - Institute of Biomedical Sciences, Tongji University, Cornell University, Lund University, University of Duisburg-Essen, Barcelona Institute for Global Health (ISGlobal) - CLIMA Climate and Health Program, University of Tübingen - Institute of Tropical Medicine, CERTH - Chemical Process and Energy Resources Institute, Centre for Research and Technology Hellas (CERTH), Universidade do Porto, Rutgers University, New Brunswick - Rutgers Cancer Institute of New Jersey, Elizade University, University of Copenhagen - Section for Ecology and Evolution, Cornell University - Weill Cornell Medicine, Indian Statistical Institute, New Delhi - Indian Statistical Institute, Universidad Andrés Bello, Cornell University - Weill Cornell Medicine, Cornell University - Department of Physiology and Biophysics, City University of New York (CUNY), University of Southern California, University of Southern California, University of Southern California, University of Science and Technology (Hong Kong), Jagiellonian University in Krakow, Jagiellonian University in Krakow, Medical University of Bialystok, Institute of Molecular Biology and Genetics NAS of Ukraine, University of Hawaii at Manoa - John A. Burns School of Medicine, University of Hawaii at Manoa - Department of Complementary and Integrative Medicine, University of Idaho, - School of Medicine, Universiti Kebangsaan Malaysia, Keio University, City University of Hong Kong (CityU), Duke-NUS Medical School - Programme in Emerging Infectious Diseases, Weill Cornell Medicine - Department of Physiology, Biophysics, and Systems Biology and East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology
Downloads 85 (777,583)

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RNA Virus, Urban environment, Metatranscriptomics, Phylogenetic diversity, Biogeographical pattern

2.

Transcriptome Profiling of Hepatocellular Carcinoma Uncovers Multi-Types of Dysregulated ncRNAs

Number of pages: 34 Posted: 08 Oct 2018
Southern Medical University, Southern Medical University, East China Normal University (ECNU), Southern Medical University, Zhejiang University - First Affiliated Hospital, East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology and Southern Medical University - Fengxian Hospital
Downloads 73 (852,604)

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hepatocellular carcinoma (HCC); long non-coding RNA (lncRNA); circular RNA (circRNA); microRNA (miRNAs); competing endogenous (ceRNA) network

3.

ToPP: Tumor online Prognostic Analysis Platform for Prognostic Feature Selection and Clinical Patient Subgroup Selection

Number of pages: 39 Posted: 06 Aug 2021
Shanghai Institute for Biomedical and Pharmaceutical Technologies - Shanghai Center for Bioinformation Technology, Institute for Systems Biology, Shanghai Institute for Biomedical and Pharmaceutical Technologies - Shanghai Center for Bioinformation Technology, Shanghai Institute for Biomedical and Pharmaceutical Technologies - Shanghai Center for Bioinformation Technology, East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology and Shanghai Institute for Biomedical and Pharmaceutical Technologies - Shanghai Center for Bioinformation Technology
Downloads 70 (875,328)

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tumor; multi-omics; prognostic modeling; sub typing; survival analysis; pan-cancer

4.

Exome Sequencing Identifies Rare Variants in Novel Candidate Genes Associated with Pulmonary Atresia

Number of pages: 33 Posted: 13 Jul 2019
Shanghai Jiao Tong University (SJTU) - Department of Pediatric Cardiovascular, East China Normal University (ECNU), Shanghai Jiao Tong University (SJTU) - Department of Pediatric Cardiovascular, Shanghai Jiao Tong University (SJTU) - Department of Pediatric Cardiovascular, East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology, Fudan University, Shanghai Jiao Tong University (SJTU), Shanghai Jiao Tong University (SJTU) - Department of Pediatric Cardiovascular, Shanghai Jiao Tong University (SJTU) - Department of Pediatric Cardiovascular, Shanghai Jiao Tong University (SJTU) and Shanghai Jiao Tong University (SJTU), School of Medicine - Xinhua Hospital
Downloads 65 (916,100)

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Congenital heart defect; Pulmonary atresia; Wholeexome sequencing; Rare variants; Gene mutations

5.

Machine-learning-based online prediction models for new-onset atrial fibrillation in ICU patients with severe sepsis: development and validation in a retrospective cohort

Number of pages: 41 Posted: 06 Dec 2025
affiliation not provided to SSRN, East China Normal University (ECNU) - Institute of Biomedical Sciences, affiliation not provided to SSRN, Nanjing Medical University - Suzhou Municipal Hospital, affiliation not provided to SSRN and East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology
Downloads 52 (1,063,489)

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Severe sepsis, New-onset atrial fibrillation, intensive care unit, Risk prediction, MIMIC database, Machine learning models

6.

Integrative Analysis Identifies Potential DNA Methylation Biomarkers for Pan-Cancer Diagnosis and Prognosis

Number of pages: 41 Posted: 28 Sep 2018
Wubin Ding, Geng Chen and Tieliu Shi
East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology, East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology and East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology
Downloads 47 (1,097,529)
Citation 2

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DNA methylation, cancer diagnosis, prognosis, survival analysis, machine learning, pan-cancer

7.

Low Quality Cells Should Be Removed from Single-Cell RNA-Seq Data Analysis

Number of pages: 9 Posted: 03 Jan 2019
Geng Chen, Meng Ren, Chengkai Lv and Tieliu Shi
East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology, East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology, East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology and East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology
Downloads 44 (1,133,231)

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single-cell RNA-seq, low quality, Glioblastoma, quality control

8.

A Global Atlas of the Pan-Urban DNA Virome Reveals Extensive Viral Diversity and Its Links to Ecology and Public Health

Number of pages: 39 Posted: 13 Mar 2026
East China Normal University (ECNU) - Institute of Biomedical Sciences, East China Normal University (ECNU) - Institute of Biomedical Sciences, East China Normal University (ECNU) - Institute of Biomedical Sciences, Barcelona Institute for Global Health (ISGlobal) - CLIMA Climate and Health Program, Lund University, Jagiellonian University in Krakow, Jagiellonian University in Krakow, University of Idaho, Institut Pasteur Korea, Cornell University - Weill Cornell Medicine, Cornell University - Weill Cornell Medicine, Weill Cornell Medicine - Department of Physiology, Biophysics, and Systems Biology, East China Normal University (ECNU) - Center for Bioinformatics and Computational Biology and Independent
Downloads 13 (1,526,714)

Abstract:

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Urban virome, Bacteriophage, Antimicrobial resistance, Host-virus interaction, Viral dark matter