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Gene W. Yeo

University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine

SCHOLARLY PAPERS

8

DOWNLOADS

361

TOTAL CITATIONS

1

Scholarly Papers (8)

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1.

Discovery and Functional Interrogation of the Virus and Host RNA Interactome of SARS-Cov-2 Proteins

Number of pages: 86 Posted: 15 Jun 2021
Joy S. Xiang, Jasmine R. Mueller, En-Ching Luo, Brian Yee, Danielle Schafer, Jonathan C. Schmok, Frederick E. Tan, Hsuan-Lin Her, Chun-Yuan Chen, Kristopher W. Brannan, Krysten L. Jones, Samuel S. Park, Wenhao Jin, Rachael McVicar, Elizabeth M. Kwong, Phuong Le, Eric Kofman, Anthony Q. Vu, Yanhua Li, Alexandra T. Tankka, Kevin D. Dong, Yan Song, Aaron F. Carlin, Eric L. Van Nostrand, Sandra L. Leibel and Gene W. Yeo
Agency for Science, Technology and Research (A*STAR) - Institute of Molecular and Cell Biology, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, Sanford Burnham Prebys Medical Discovery Institute, Sanford Burnham Prebys Medical Discovery Institute, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, The Scripps Research Institute - Department of Integrative Structural and Computational Biology, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California San Diego - Department of Cellular and Molecular Medicine, University of California, San Diego (UCSD) - Department of Medicine, Baylor College of Medicine - Verna & Marrs McLean Department of Biochemistry & Molecular Biology, University of California, San Diego (UCSD) - Department of Pediatrics and University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine
Downloads 77 (823,616)
Citation 1

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2.

Comprehensive RNA Binding Protein Analyses and Deep Learning Uncover Genetic Constraints and Disease Associations in Protein-RNA Interfaces

Number of pages: 60 Posted: 07 Jan 2025
Hsuan-lin Her, Brian Alan Yee, Xintao Wei, Evan August Boyle, Katie Rothamel, Steven M. Blue, Sara Olson, Lijun Zhan, Jasmine Rose Mueller, Samuel S. Park, Grady G. Nguyen, Jack T. Naritomi, Adam Klie, Stefan Aigner, Brenton R. Graveley, Gene W. Yeo and Sneak Peek Administrator
University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of Connecticut Health Center, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD), University of California, San Diego (UCSD), University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD), University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of Connecticut Health Center, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine and Independent
Downloads 69 (883,195)

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RNA-binding protein, eCLIP, Deep learning, negative selection, variant interpretation, splicing

3.

Persistent mRNA Localization Defects and Cell Death in ALS Neurons Caused by Transient Cellular Stress

Number of pages: 36 Posted: 29 Oct 2020
Sebastian Markmiller, Shashank Sathe, Kari L. Server, Thai B. Nguyen, Amit Fulzele, Neal Cody, Ashkan Javaherian, Sara Broski, Steven Finkbeiner, Eric Bennett, Eric Lécuyer and Gene W. Yeo
University of California, San Diego (UCSD) - Institute for Genomic Medicine (IGM), University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Section of Cell and Developmental Biology, Institut de recherches cliniques de Montréal (IRCM), Gladstone Institutes - Center for Systems and Therapeutics, Gladstone Institutes - Center for Systems and Therapeutics, University of California, San Francisco (UCSF) - Gladstone Institute of Neurological Disease, University of California, San Diego (UCSD) - Section of Cell and Developmental Biology, Institut de recherches cliniques de Montréal (IRCM) and University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine
Downloads 53 (1,031,043)

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stress granules, TDP-43, RNA Localization, Neurodegeneration, Amyotrophic Lateral Sclerosis (ALS), HNRNPA2B1, motor neurons, nucleocytoplasmic transport, protein aggregation, cellular stress response

4.

LARP4 is an Rna-Binding Protein that Binds Nuclear-Encoded Mitochondrial mRNAs to Promote Mitochondrial Function

Number of pages: 35 Posted: 04 Feb 2022
Benjamin Mark Lewis, Chae Yun Cho, Tony Hunter and Gene W. Yeo
Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies and University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine
Downloads 42 (1,157,785)

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LARP4, RNA-binding proteins, RBP, eCLIP, ENCODE, nuclear-encoded mitochondrial mRNAs, mitochondrial ribosomal proteins, oxidative phosphorylation, OXPHOS, proliferation, Protein Translation, proteomics, extracellular flux

5.

Aberrant Host mRNA Partitioning in Ebola Virus Condensates Driven by RNA Folding Perpetuates Species-Dependent Interferon Response

Number of pages: 56 Posted: 01 Oct 2025
Jingru Fang, Dylan C. Lam, Clarence K. Mah, Hailey M. Tanner, Troy Comi, Yuan Cai, Chengyi Chen, Aartjan J.W. te Velthuis, Clifford Brangwynne, Gene W. Yeo, Erica Ollmann Saphire and Sneak Peek Administrator
Princeton University, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, Princeton University, Princeton University, Vizgen, Inc, Vizgen, Inc, Princeton University, Princeton University - Lewis-Sigler Institute for Integrative Genomics, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, La Jolla Institute for Allergy and Immunology (LIAI) - Center for Infectious Disease and Vaccine Research and Independent
Downloads 35 (1,249,711)

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Subcellular spatial transcriptomics, RNA viruses, virus-host interactions, Viral condensates, Immune dysregulation, Viral evolution, RNA biology

6.

HydRA: Deep-Learning Models for Predicting RNA-Binding Capacity from Protein Interaction Association Context and Protein Sequence

Number of pages: 70 Posted: 12 Jan 2023
Wenhao Jin, Kristopher Brannan, Katannya Kapeli, Samuel S. Park, Hui Qing Tan, Maya L. Gosztyla, Mayuresh Mujumdar, Joshua Ahdout, Bryce Henroid, Katherine Rothamel, Joy S. Xiang, Limsoon Wong and Gene W. Yeo
University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, National University of Singapore (NUS) - Department of Physiology, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, National University of Singapore (NUS) - Department of Physiology, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, National University of Singapore (NUS) - Department of Computer Science and University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine
Downloads 31 (1,318,317)

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biotechnology, bioinformatics, AI, RNA-binding proteins

7.

Non-MicroRNA Binding Competitively Inhibits LIN28 Regulation

Number of pages: 19 Posted: 25 Feb 2021
Frederick E. Tan, Shashank Sathe, Emily C. Wheeler and Gene W. Yeo
Department of Cellular and Molecular Medicine, University of California at San Diego, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, Department of Cellular and Molecular Medicine, University of California at San Diego and University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine
Downloads 27 (1,359,097)

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RNA-binding proteins, post-transcriptional regulation, microRNA, non-miRNA, ribosome occupancy, competitive inhibition.

8.

Active Protein Neddylation or Ubiquitylation is Dispensable for Stress Granule Dynamics

Number of pages: 30 Posted: 08 Oct 2018
Sebastian Markmiller, Amit Fulzele, Reneé Higgins, Gene W. Yeo and Eric Bennett
University of California, San Diego (UCSD) - Institute for Genomic Medicine (IGM), University of California, San Diego (UCSD) - Section of Cell and Developmental Biology, University of California, San Diego (UCSD) - Section of Cell and Developmental Biology, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine and University of California, San Diego (UCSD) - Section of Cell and Developmental Biology
Downloads 27 (1,359,097)

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