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Peter Turnbaugh

University of California, San Francisco (UCSF) - Department of Microbiology and Immunology

San Francisco, CA 94143

United States

Chan Zuckerberg Biohub

499 Illinois Street

San Francisco, CA 94158

United States

  • University of California, San Francisco (UCSF) - Department of Microbiology and Immunology

  • Chan Zuckerberg Biohub

SCHOLARLY PAPERS

8

DOWNLOADS

436

TOTAL CITATIONS

12

Scholarly Papers (8)

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1.

Diet Induces Reproducible Alterations in the Mouse and Human Gut Microbiome

Number of pages: 27 Posted: 07 Feb 2019
Jordan E. Bisanz, Vaibhav Upadhyay, Jessie A. Turnbaugh, Kimberly Ly and Peter Turnbaugh
University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco - Department of Medicine, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology and University of California, San Francisco (UCSF) - Department of Microbiology and Immunology
Downloads 139 (527,599)
Citation 7

Abstract:

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Microbiome, Meta-analysis, High-fat diet, Murine

2.

Methotrexate Impacts Conserved Pathways in Diverse Human Gut Bacteria Leading to Decreased Host Immune Activation

Number of pages: 89 Posted: 30 Sep 2020
Renuka R. Nayak, Margaret Alexander, Ishani Deshpande, Kye Stapleton-Grey, Bipin Rimal, Andrew D. Patterson, Carles Ubeda, Jose U. Scher and Peter Turnbaugh
University of California, San Francisco (UCSF) - Rheumatology Division, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, Pennsylvania State University - Department of Veterinary and Biomedical Sciences, Pennsylvania State University - Department of Veterinary and Biomedical Sciences, CIBER de Epidemiología y Salud Pública (CIBERESP), New York University (NYU) - Department of Medicine and University of California, San Francisco (UCSF) - Department of Microbiology and Immunology
Downloads 62 (942,565)
Citation 1

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rheumatoid arthritis, human gut microbiome, off-target effects, purine and pyrimidine biosynthesis, immune activation, methotrexate

3.

Methotrexate-Induced Shifts in the Human Gut Microbiome Decrease Immune Activation

Number of pages: 63 Posted: 30 Apr 2020
Renuka R. Nayak, Margaret Alexander, Ishani Deshpande, Kye Stapleton-Grey, Carles Ubeda, Jose U. Scher and Peter Turnbaugh
University of California, San Francisco (UCSF) - Rheumatology Division, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, CIBER de Epidemiología y Salud Pública (CIBERESP), New York University (NYU) - Department of Medicine and University of California, San Francisco (UCSF) - Department of Microbiology and Immunology
Downloads 50 (1,063,489)

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rheumatoid arthritis, human gut microbiome, off-target effects, immune activation, methotrexate

4.

CRISPR-Cas Immune System of a Prevalent Human Gut Bacterium Reveals Hypertargeting Against Gut Virome Phages

Number of pages: 47 Posted: 02 Apr 2019
Paola Soto-Perez, Jordan E. Bisanz, Joel D. Berry, Kathy N. Lam, Joseph Bondy-Denomy and Peter Turnbaugh
University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology and University of California, San Francisco (UCSF) - Department of Microbiology and Immunology
Downloads 48 (1,086,013)

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human microbiome, CRISPR-Cas systems, bacteriophage, virome, heterologous expression, hyper-targeting

5.

Human Gut Bacterial Metabolism Drives Th17 Activation and Colitis

Number of pages: 64 Posted: 25 Nov 2020
Margaret Alexander, Qi Yan Ang, Renuka R. Nayak, Annamarie E. Bustion, Bing Zhang, Vaibhav Upadhyay, Katherine S. Pollard, Susan V. Lynch and Peter Turnbaugh
University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, Gladstone Institutes, University of California, San Francisco - Division of Gastroenterology and Hepatology, University of California, San Francisco - Department of Medicine, Gladstone Institutes, University of California, San Francisco - Division of Gastroenterology and Hepatology and University of California, San Francisco (UCSF) - Department of Microbiology and Immunology
Downloads 45 (1,121,190)
Citation 1

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autoimmune disease, inflammatory bowel disease, human gut microbiome, dietary supplementation, T helper 17 cells, microbial metabolism

6.

A Diet-Dependent Host Metabolite Shapes the Gut Microbiota to Protect from Autoimmunity

Number of pages: 68 Posted: 09 Nov 2023
Margaret Alexander, Vaibhav Upadhyay, Rachel Rock, Lorenzo Ramirez, Patrycja Puchalska, Diego Orellana, Qi Yan Ang, Jessie A. Turnbaugh, Yuan Tian, Darren Dumlao, Renuka R. Nayak, Andrew D. Patterson, John C. Newman, Peter Crawford and Peter Turnbaugh
University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of Minnesota - Minneapolis, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, Pennsylvania State University, University of California, San Francisco (UCSF), University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, Pennsylvania State University - Center for Molecular Toxicology and Carcinogenesis, Buck Institute for Research on Aging, University of Minnesota - Minneapolis - Division of Molecular Medicine and University of California, San Francisco (UCSF) - Department of Microbiology and Immunology
Downloads 41 (1,170,409)
Citation 3

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autoimmune disease, gut microbiome, ketogenic diet, ketogenesis, immune activation

7.

Phage-Delivered CRISPR-Cas9 for Strain-Specific Depletion and Genomic Deletions in the Gut Microbiome

Number of pages: 60 Posted: 03 Aug 2021
Kathy N. Lam, Peter Spanogiannopoulos, Paola Soto-Perez, Margaret Alexander, Matthew J. Nalley, Jordan E. Bisanz, Renuka R. Nayak, Allison M. Weakley, Feiqiao B. Yu and Peter Turnbaugh
University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, Pennsylvania State University, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, Stanford University - Stanford Microbiome Therapies Initiative, Stanford University - Chan Zuckerberg Biohub and University of California, San Francisco (UCSF) - Department of Microbiology and Immunology
Downloads 31 (1,304,549)

Abstract:

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Human gut microbiome; bacteriophage; CRISPR-Cas systems; microbiome editing; genomic deletions; strain-specific targeting

8.

Human Gut Actinobacteria Boost Drug Absorption by Secreting P-Glycoprotein ATPase Inhibitors

Number of pages: 49 Posted: 03 Nov 2022
Than S. Kyaw, Moriah Sandy, Kai Trepka, Janice JN Goh, Kristie Yu, Vincent Dimassa, Elizabeth N. Bess, Jordan E. Bisanz and Peter Turnbaugh
University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, University of California, San Francisco (UCSF) - Department of Microbiology and Immunology, Pennsylvania State University and University of California, San Francisco (UCSF) - Department of Microbiology and Immunology
Downloads 20 (1,448,301)

Abstract:

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Human gut microbiome, Eggerthella lenta, intestinal absorption, metabolomics, drug transport, cancer drug resistance, P-glycoprotein