University of Oxford - Nuffield Department of Medicine, Università Vita-Salute San Raffaele - IRCCS San Raffaele Scientific Institute, University of Cambridge - Department of Genetics, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford - Nuffield Department of Medicine, European Bioinformatics Institute (EMBL-EBI), University of Oxford - Nuffield Department of Medicine, Imperial College London, Harvard University - Harvard Medical School, Università Vita-Salute San Raffaele - IRCCS San Raffaele Scientific Institute, Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER) - Tuberculosis Genomics Unit, Centers for Disease Control and Prevention (CDC), National Center for HIV/AIDS, Viral Hepatitis, STD, and TB Prevention, Division of Tuberculosis Elimination, National Health Laboratory Services (NHLS) - National Institute for Communicable Diseases, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, Foundation for Innovative New Diagnostics (FIND), Foundation for Innovative New Diagnostics (FIND), Foundation for Innovative New Diagnostics (FIND), Foundation for Innovative New Diagnostics (FIND), World Health Organization (WHO) - Global Tuberculosis Programme, World Health Organization (WHO) - Global Tuberculosis Programme, University of Oxford - Nuffield Department of Medicine, Independent, Independent, University of Oxford - Nuffield Department of Medicine, World Health Organization (WHO) - Global Tuberculosis Programme and University of California, San Diego (UCSD)

University of Oxford - Nuffield Department of Medicine, Oxford University Hospitals NHS Foundation Trust, National Mycobacterial Reference Service- Central and North, Public Health England, Tuberculosis, Acute Respiratory, Gastrointestinal, Emerging/Zoonotic Infections and Travel Migrant Health Division, (T.A.R.G.E.T), National Infection Service, Public Health England, Tuberculosis, Acute Respiratory, Gastrointestinal, Emerging/Zoonotic Infections and Travel Migrant Health Division, (T.A.R.G.E.T), National Infection Service, Public Health England, Government of the United Kingdom - Public Health England, Oxford University Hospitals NHS Foundation Trust, Oxford University Hospitals NHS Foundation Trust, Government of the United Kingdom - Public Health England, Government of the United Kingdom - Public Health England, Government of the United Kingdom - Public Health England, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford - Nuffield Department of Medicine, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford - NIHR Health Protection Research Unit in Healthcare Associated Infection and Antimicrobial Resistance, Oxford University Hospitals NHS Foundation Trust and University of Oxford - Nuffield Department of Medicine

University of Oxford - Health Economics Research Centre (HERC), University of Oxford - Health Economics Research Centre (HERC), Imperial College London - NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, University College London - Centre for Behaviour Change (CBC), University College London - Centre for Behaviour Change (CBC), University of Oxford - Health Economics Research Centre (HERC), University of Oxford - NIHR Health Protection Research Unit in Healthcare Associated Infection and Antimicrobial Resistance, Government of the United Kingdom - Public Health England, University of Oxford - NIHR Health Protection Research Unit in Healthcare Associated Infection and Antimicrobial Resistance, University of Oxford - NIHR Health Protection Research Unit in Healthcare Associated Infection and Antimicrobial Resistance, University of Oxford - Nuffield Department of Medicine, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford - Nuffield Department of Population Health, University of Oxford - Department of Primary Care Health Sciences and University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital

University of Oxford - Nuffield Department of Medicine, Hospital of Tropical Diseases - Oxford University Clinical Research Unit, University Hospitals Birmingham NHS Foundation Trust, University of Oxford, UK Health Security Agency, University of Oxford, University of Oxford - Nuffield Department of Medicine, UK Health Security Agency - TB Unit and National Mycobacterial Reference Service, University of Oxford - Nuffield Department of Medicine, UK Health Security Agency - TB Unit and National Mycobacterial Reference Service and University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital

University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, Stellenbosch University, Faculty of Medicine and Health Sciences, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, SAMRC Centre, Centers for Disease Control and Prevention (CDC), National Center for HIV/AIDS, Viral Hepatitis, STD, and TB Prevention, Division of Tuberculosis Elimination, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, Centers for Disease Control and Prevention (CDC), National Center for HIV/AIDS, Viral Hepatitis, STD, and TB Prevention, Division of Tuberculosis Elimination, University of Oxford - Nuffield Department of Medicine and University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital