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Frank Aarestrup

Technical University of Denmark - Research Group for Genomic Epidemiology

SCHOLARLY PAPERS

6

DOWNLOADS

434

TOTAL CITATIONS

1

Scholarly Papers (6)

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1.

Foodborne Pathogen Dynamics in Meat and Meat Analogue Analysed by Traditional Microbiology and Metagenomic Sequencing

Number of pages: 17 Posted: 01 Aug 2023
Saria Otani, Francesco Bonaldo, Baptiste Jacques Philippe Avot, Alessandra De Cesare and Frank Aarestrup
Technical University of Denmark, University of Parma, Technical University of Denmark, University of Bologna and Technical University of Denmark - Research Group for Genomic Epidemiology
Downloads 106 (659,652)

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Foodborne Pathogens, Meat, meat analogue, plant-based meat, Metagenomics

2.

Modelling the Effectiveness of Surveillance Based on Metagenomics in Detecting, Monitoring, and Forecasting Antimicrobial Resistance in Livestock Production Under Economic Constraints

Number of pages: 20 Posted: 15 Jul 2022
Ofosuhene Apenteng, Frank Aarestrup and Håkan Vigre
Technical University of Denmark - Research Group for Genomic Epidemiology, Technical University of Denmark - Research Group for Genomic Epidemiology and Technical University of Denmark - Research Group for Genomic Epidemiology
Downloads 81 (796,622)

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3.

Nanopore Sequencing Technology for Clinical Diagnosis of Infectious Diseases Where Laboratory Capacity Is Meager: A Case Report

Number of pages: 8 Posted: 15 Dec 2022
Happiness Houka Kumburu, Mariana J. Shayo, Marco van Zwetslaar, Judith Njau, Davis Kuchaka, Ignas Ignas, Boaz Wadugu, Robert Kasworm, Lazaro J. Masaki, Malte B. Hallgren, Philip T.L.C. Clausen, Blandina T. Mmbaga, Frank Aarestrup and Tolbert B. Sonda
Kilimanjaro Christian Medical University College, Kilimanjaro Christian Medical University College, Kilimanjaro Christian Medical University College - Kilimanjaro Clinical Research Institute, Kilimanjaro Christian Medical University College - Kilimanjaro Clinical Research Institute, Kilimanjaro Christian Medical University College - Kilimanjaro Clinical Research Institute, Kilimanjaro Christian Medical University College - Kilimanjaro Clinical Research Institute, Kilimanjaro Christian Medical University College - Kilimanjaro Clinical Research Institute, Machame Lutheran Hospital, Machame Lutheran Hospital, Technical University of Denmark, Technical University of Denmark, Kilimanjaro Christian Medical University College - Kilimanjaro Clinical Research Institute, Technical University of Denmark - Research Group for Genomic Epidemiology and Kilimanjaro Christian Medical University College - Kilimanjaro Christian Medical Centre
Downloads 73 (860,052)

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Bacterial infections, nanopore sequencing technology, resource limited settings, laboratory diagnosis

4.

Metagenomic Analysis of Sewage for Surveillance of Bacterial Pathogens: A Release Experiment to Determine Sensitivity

Number of pages: 32 Posted: 09 Dec 2021
Frank Aarestrup, Simon Kohle and Thomas Nordahl Petersen
Technical University of Denmark - Research Group for Genomic Epidemiology, affiliation not provided to SSRN and affiliation not provided to SSRN
Downloads 62 (951,658)

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Sewage, Release, Bacteria, metagenomics

5.

Predicting Listeria Monocytogenes Virulence Using Whole Genome Sequencing and Machine Learning

Number of pages: 31 Posted: 04 May 2023
Alexander Gmeiner, Patrick Murigu Kamau Njage, Lisbeth Truelstrup Hansen, Frank Aarestrup and Pimlapas Leekitcharoenphon
Technical University of Denmark, Technical University of Denmark - National Food Institute, Technical University of Denmark, Technical University of Denmark - Research Group for Genomic Epidemiology and Technical University of Denmark
Downloads 61 (951,658)

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Listeria monocytogenes, Hazard Characterisation, Machine Learning, Virulence, Whole Genome Sequencing, Prediction, Food safety

6.

Trends in Salmonella Dublin Over Time in Denmark from Food and Animal Related Isolates

Number of pages: 15 Posted: 09 Jun 2023
Pimlapas Leekitcharoenphon, Håkan Vigre, Rolf Kaas and Frank Aarestrup
Technical University of Denmark, Technical University of Denmark, Technical University of Denmark and Technical University of Denmark - Research Group for Genomic Epidemiology
Downloads 51 (1,063,489)
Citation 1

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Whole genome sequencing, surveillance, Salmonella Dublin, Effective population size