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Danielle L. Swaney

University of California, San Francisco (UCSF) - Quantitative Biosciences Institute

Third Avenue and Parnassus

San Francisco, CA 94158

United States

QBI Coronavirus Research Group (QCRG)

San Francisco, CA 94158

United States

University of California, San Francisco (UCSF) - Department of Cellular and Molecular Pharmacology

San Francisco, CA

United States

Gladstone Institutes - Gladstone Institute of Data Science and Biotechnology

SCHOLARLY PAPERS

4

DOWNLOADS

341

TOTAL CITATIONS

0

Scholarly Papers (4)

1.

SARS-CoV-2 Variants Evolve Convergent Strategies to Remodel the Host Response

Number of pages: 64 Posted: 15 Jan 2023
University of California, Los Angeles (UCLA) - Department of Microbiology, Immunology and Molecular Genetics, QBI Coronavirus Research Group (QCRG), University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, QBI Coronavirus Research Group (QCRG), Gladstone Institutes - Gladstone Institute of Data Science and Biotechnology, Texas Biomedical Research Institute, QBI Coronavirus Research Group (QCRG), University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, Gladstone Institutes - Gladstone Institute of Data Science and Biotechnology, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University College London - Division of Infection and Immunity, University College London - Division of Infection and Immunity, MRC-University of Glasgow Centre for Virus Research, MRC-University of Glasgow Centre for Virus Research, MRC-University of Glasgow Centre for Virus Research, Gladstone Institutes - Gladstone Institute of Data Science and Biotechnology, Gladstone Institutes - Gladstone Institute of Data Science and Biotechnology, Tel Aviv University - School of Computer Sciences, Tel Aviv University - School of Electrical Engineering, University College London - Division of Infection and Immunity, University College London - Division of Infection and Immunity, University College London - Division of Infection and Immunity, QBI Coronavirus Research Group (QCRG), QBI Coronavirus Research Group (QCRG), QBI Coronavirus Research Group (QCRG), Wellcome Genome Campus - European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, QBI Coronavirus Research Group (QCRG), QBI Coronavirus Research Group (QCRG), QBI Coronavirus Research Group (QCRG), QBI Coronavirus Research Group (QCRG), QBI Coronavirus Research Group (QCRG), University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, Mount Sinai Health System - Huffington Center for Cell-based Research in Parkinson's Disease, Mount Sinai Health System - Huffington Center for Cell-based Research in Parkinson's Disease, Synthego Corporation, Synthego Corporation, Synthego Corporation, Synthego Corporation, Synthego Corporation, Synthego Corporation, Synthego Corporation, PharmaMar, S.A., PharmaMar, S.A., PharmaMar, S.A., University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, Massachusetts Institute of Technology (MIT) - MIT Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology (MIT) - MIT Computer Science and Artificial Intelligence Laboratory, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University College London - Division of Infection and Immunity, QBI Coronavirus Research Group (QCRG), Tel Aviv University - School of Computer Sciences, QBI Coronavirus Research Group (QCRG), Texas Biomedical Research Institute, MRC-University of Glasgow Centre for Virus Research, MRC-University of Glasgow Centre for Virus Research, QBI Coronavirus Research Group (QCRG), QBI Coronavirus Research Group (QCRG), University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, QBI Coronavirus Research Group (QCRG), QBI Coronavirus Research Group (QCRG), University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, QBI Coronavirus Research Group (QCRG), QBI Coronavirus Research Group (QCRG)Gladstone Institutes - Gladstone Institute of Data Science and Biotechnology and Independent
Downloads 178 (428,796)

Abstract:

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SARS-CoV-2, variants, virus-host interactions, innate immunity, protein-protein interactions, proteomics, transcriptomics, systems biology.

2.

A Foundational Atlas of Autism Protein Interactions Reveals Molecular Convergence

Number of pages: 95 Posted: 19 Dec 2023
University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Department of Cellular and Molecular Pharmacology, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, Rezo Therapeutics, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, Rezo Therapeutics, University of California, San Francisco (UCSF) - Gladstone Institutes, University of California, San Francisco (UCSF) - Center for Systems and Therapeutics, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, European Bioinformatics Institute, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Diego (UCSD) - Department of Computer Science & Engineering, University of California, San Francisco (UCSF) - Gladstone Institute of Data Science and Biotechnology, University of California, San Francisco (UCSF) - Center for Systems and Therapeutics, University of California, San Francisco (UCSF) - Gladstone Institutes, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, Vanderbilt University, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Diego (UCSD) - Department of Medicine, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, Rezo Therapeutics, University of Paris-Saclay - Institut Pasteur, University of Paris-Saclay - Institut Pasteur, University of California, San Francisco (UCSF) - Center for Systems and Therapeutics, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, Rezo Therapeutics, University of California, San Diego (UCSD) - Department of Medicine, Wellcome Genome Campus - European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) - Department of Psychiatry, University of California, San Francisco (UCSF) - Department of Psychiatry and Behavioral Sciences and QBI Coronavirus Research Group (QCRG)Gladstone Institutes - Gladstone Institute of Data Science and Biotechnology
Downloads 89 (747,755)

Abstract:

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Autism spectrum disorder, neurodevelopmental disorder, psychiatry, protein-protein interactions, proteomics, genetics, systems biology, convergence, AlphaFold, forebrain organoids, Psychiatric Cell Map Initiative

3.

Ancestry-Specific Structural Variation at 17q21.31 Reveals a Novel H1 Sub-Haplotype and Functional Effects on Tau Biology

Number of pages: 67 Posted: 14 Jul 2025
Mount Sinai Health System - Department of Genetics and Genomic Sciences, Mount Sinai Health System - Department of Genetics and Genomic Sciences, Mount Sinai Health System - Department of Genetics and Genomic Sciences, Mount Sinai Health System - Department of Genetics and Genomic Sciences, National Institutes of Health - Neuromuscular Diseases Research Section, Mount Sinai Health System - Department of Genetics and Genomic Sciences, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, Mount Sinai Health System - Department of Genetics and Genomic Sciences, University of California, San Francisco (UCSF) - Department of Pathology, University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, Icahn School of Medicine at Mount Sinai - Nash Department of Neuroscience, Icahn School of Medicine at Mount Sinai - Department of Genetics and Genomic Sciences and Independent
Downloads 44 (1,145,425)

Abstract:

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Ancestry, Genomics, MAPT, 17q21.31 Haplotype, iPSC

4.

The Chlamydia Effector Dre1 Binds to Dynactin to Reposition Host Organelles During Infection

Number of pages: 51 Posted: 04 Sep 2024
University of California, San Francisco (UCSF), University of California, San Francisco (UCSF), Duke University, University of California, San Francisco (UCSF), University of California, San Francisco (UCSF), University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF), University of California, San Francisco (UCSF), Duke University, University of California, San Francisco (UCSF), Duke University, QBI Coronavirus Research Group (QCRG)Gladstone Institutes - Gladstone Institute of Data Science and Biotechnology, University of California, San Francisco (UCSF), University of California, San Francisco (UCSF) - Quantitative Biosciences Institute, University of California, San Francisco (UCSF) and Independent
Downloads 30 (1,318,317)

Abstract:

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Chlamydia, dynactin, host-pathogen interactions, centrosome, Microtubule organizing center, Golgi Apparatus, primary cilia, bacterial pathogenesis