London School of Hygiene & Tropical Medicine - Department of Infection Biology, University of Cambridge - Department of Medicine, University of Cambridge - Department of Medicine, University of Cambridge - Department of Medicine, Genomics England, University of Cambridge - Department of Veterinary Medicine, University of Cambridge - Department of Veterinary Medicine, European Bioinformatics Institute (EMBL-EBI) - Wellcome Genome Campus, Wellcome Sanger Institute, British Society for Antimicrobial Chemotherapy, National Hospital for Tropical Diseases, National Hospital for Tropical Diseases, National Hospital for Tropical Diseases, National Hospital for Tropical Diseases, NHS Foundation Trust - Cambridge University Hospitals, University of Cambridge - Department of Veterinary Medicine, University of Cambridge - Department of Veterinary Medicine, University of Cambridge - Department of Medicine and NHS Foundation Trust - Cambridge University Hospitals