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Bernhard Palsson

University of California, San Diego (UCSD) - Department of Bioengineering

SCHOLARLY PAPERS

6

DOWNLOADS

256

TOTAL CITATIONS

2

Scholarly Papers (6)

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1.

Pangenome Analysis Reveals the Genetic Basis for Taxonomic Classification of the Lactobacillaceae Family

Number of pages: 26 Posted: 23 Feb 2023
Akanksha Rajput, Siddharth M. Chauhan, Omkar S. Mohite, Jason C. Hyun, Omid Ardalani, Leonie J. Jahn, Morten OA Sommer and Bernhard Palsson
University of California, San Diego (UCSD), University of California, San Diego (UCSD), Technical University of Denmark, University of California, San Diego (UCSD), Technical University of Denmark, Technical University of Denmark, Technical University of Denmark and University of California, San Diego (UCSD) - Department of Bioengineering
Downloads 95 (715,072)

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Lactobacillaceae, Pangenome, Biosynthetic gene clusters, phylogroup, mobilome, Lactic acid bacteria, Lactobacillus, Lactiplantibacillus plantarum

2.

Blood Donor Exposome and Impact of Common Drugs on Red Blood Cell Metabolism

Number of pages: 45 Posted: 08 Oct 2020
Travis Nemkov, Davide Stefanoni, Aarash Bordbar, Aaron Issaian, Bernhard Palsson, Larry J. Dumont, Ariel Hay, Anren Song, Yang Xia, Jasmina S. Redzic, Elan Z. Eisenmesser, James C. Zimring, Steve Kleinman, Kirk C. Hansen, Michael P. Busch, Angelo D'Alessandro and Recipient Epidemiology and Donor Evaluation Study-III (REDS-III) RBC-Omics Study
University of Colorado at Denver - Department of Biochemistry and Molecular Genetics, University of Colorado at Denver - Department of Biochemistry and Molecular Genetics, Sinopia Biosciences Inc., University of Colorado at Denver - Department of Biochemistry and Molecular Genetics, University of California, San Diego (UCSD) - Department of Bioengineering, Vitalant Research Institute, University of Virginia, University of Texas at Houston, University of Texas at Houston, University of Colorado at Denver - Department of Biochemistry and Molecular Genetics, University of Colorado at Denver - Department of Biochemistry and Molecular Genetics, University of Virginia, University of British Columbia (UBC), University of Colorado at Denver - Department of Biochemistry and Molecular Genetics, Vitalant Research Institute, University of Colorado at Denver - Department of Biochemistry and Molecular Genetics and Independent
Downloads 43 (1,145,425)
Citation 1

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transfusion medicine, drug metabolism, high-throughput metabolomics, environmental exposure

3.

Adaptive Evolution of a Minimal Organism With a Synthetic Genome

Number of pages: 12 Posted: 27 Jun 2022
Troy E. Sandberg, Kim Wise, Christopher Dalldorf, Richard Szubin, Adam M. Feist, John I. Glass and Bernhard Palsson
University of California, San Diego (UCSD), J. Craig Venter Institute, California, University of California, San Diego (UCSD), University of California, San Diego (UCSD) - Department of Bioengineering, University of California, San Diego (UCSD) - Department of Bioengineering, J. Craig Venter Institute, California and University of California, San Diego (UCSD) - Department of Bioengineering
Downloads 41 (1,170,409)
Citation 1

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4.

Regulatory Perturbations of Ribosome Allocation Optimize the Growth Proteome with a Trade-Off in Adaptation Capacity

Number of pages: 37 Posted: 03 Sep 2021
David Hidalgo, César A. Martínez-Ortiz, Bernhard Palsson, José I. Jiménez and Jose Utrilla
National Autonomous University of Mexico (UNAM) - Centre for Genomic Sciences, Universidad Nacional Autónoma de México - Centre for Genomic Sciences, University of California, San Diego (UCSD) - Department of Bioengineering, Imperial College London - Department of Life Sciences and Universidad Nacional Autónoma de México - Centre for Genomic Sciences
Downloads 29 (1,332,057)

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ribosomes, rRNA, Resource Allocation, fitness, RNA polymerase

5.

Systems Biology of Competency in Bacteria is Revealed by Applying Novel Data Analytics to the Transcriptome

Number of pages: 65 Posted: 23 Dec 2022
Jongoh Shin, Kevin Rychel and Bernhard Palsson
University of California, San Diego (UCSD) - Department of Bioengineering, University of California, San Diego (UCSD) - Department of Bioengineering and University of California, San Diego (UCSD) - Department of Bioengineering
Downloads 27 (1,359,097)

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natural competence, Machine learning, Independent component analysis (ICA), Vibrio natrigens, iModulon, transcriptional regulation, systems biology, Regulon discovery

6.

Laboratory Evolution, Transcriptomics, and Modeling Reveal Mechanisms of Paraquat Tolerance

Number of pages: 46 Posted: 09 Mar 2023
Kevin Rychel, Justin Tan, Arjun Patel, Cameron Lamoureux, Ying Hefner, Richard Szubin, Josefin Johnsen, Elsayed Tharwat Tolba Mohamed, Patrick V. Phaneuf, Amitesh Anand, Connor A. Olson, Joon Ho Park, Anand V. Sastry, Laurence Yang, Adam M. Feist and Bernhard Palsson
University of California, San Diego (UCSD) - Department of Bioengineering, University of California, San Diego (UCSD) - Department of Bioengineering, University of California, San Diego (UCSD) - Department of Bioengineering, University of California, San Diego (UCSD) - Department of Bioengineering, University of California, San Diego (UCSD) - Department of Bioengineering, University of California, San Diego (UCSD) - Department of Bioengineering, Technical University of Denmark - The Novo Nordisk Foundation Center for Biosustainability- Sustainable Food Innovation Group, Technical University of Denmark - The Novo Nordisk Foundation Center for Biosustainability- Sustainable Food Innovation Group, Technical University of Denmark - The Novo Nordisk Foundation Center for Biosustainability- Sustainable Food Innovation Group, Tata Institute of Fundamental Research (TIFR), University of California, San Diego (UCSD) - Department of Bioengineering, Massachusetts Institute of Technology (MIT) - Department of Chemical Engineering, University of California, San Diego (UCSD) - Department of Bioengineering, Queen's University - Department of Chemical Engineering, University of California, San Diego (UCSD) - Department of Bioengineering and University of California, San Diego (UCSD) - Department of Bioengineering
Downloads 21 (1,436,435)

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systems biology, adaptive laboratory evolution, Oxidative stress, paraquat, transcriptomics, Big Data Analytics, computational biology, transcriptional regulatory networks