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David H. Mathews

University of Rochester Medical Center

SCHOLARLY PAPERS

5

DOWNLOADS

260

TOTAL CITATIONS

0

Scholarly Papers (5)

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1.

Linearalifold: Linear-Time Consensus Structure Prediction for Rna Alignments

Number of pages: 8 Posted: 07 Feb 2024
Apoorv Malik, Liang Zhang, Ning Dai, Sizhen Li, He Zhang, David H. Mathews and Liang Huang
Oregon State University, Oregon State University, Oregon State University, Oregon State University, Oregon State University, University of Rochester Medical Center and Oregon State University
Downloads 108 (654,668)

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RNA secondary structureRNA structure predictionhomologous foldingconsensus structure

2.

Motif Server: Web Server for Undesignable RNA Motifs and Structures

Number of pages: 14 Posted: 20 Nov 2025
Apoorv Malik, Tianshuo Zhou, Wei Yu Tang, David H. Mathews and Liang Huang
Oregon State University, Oregon State University, University of Southern California, University of Rochester Medical Center and Oregon State University
Downloads 57 (1,000,027)

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RNA Design, Inverse Folding, Undesignability, Designability, Structure Motif

3.

Targeted Pseudouridylation Identifies a Novel Ψ-Ψ Codon-Anticodon Pairing in Nonsense Suppression and Translational Recoding

Number of pages: 35 Posted: 27 Mar 2024
Yi Pan, Elzbieta Kierzek, Ryszard Kierzek, David H. Mathews and Yi-Tao Yu
University of Rochester Medical Center, Polish Academy of Sciences (PAS), Polish Academy of Sciences (PAS), University of Rochester Medical Center and University of Rochester Medical Center
Downloads 47 (1,097,529)

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Pseudouridine-pseudouridine base pair, RNA-guided RNA pseudouridylation, Codon-anticodon recognition, Nonsense suppression, PTC-readthrough

4.

Structural Impact of 3-Methylcytosine Modification on the Anticodon Stem of a Neuronally-Enriched Arginine Trna

Number of pages: 44 Posted: 18 Nov 2024
Kyle Berger, Anees Mohammed, David H. Mathews and Dragony Fu
University of Rochester, affiliation not provided to SSRN, University of Rochester Medical Center and University of Rochester
Downloads 34 (1,263,436)

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tRNA, tRNA-Arg-UCU, 3-methylcytosine, m3C, RNA modification, RNA structure, anticodon stem-loop, NMR, optical melting

5.

Identifying effective siRNAs against the circular Tau 12->7 RNA using an oligo walk

Number of pages: 16 Posted: 25 Feb 2026
Justin Welden, Giorgi Margvelani, Naghme Bagheri, Megan Miaro, David H. Mathews, David Rodgers and Stefan Stamm
University of Kentucky, University of Kentucky, University of Kentucky, University of Rochester, University of Rochester Medical Center, University of Kentucky and University of Kentucky
Downloads 14 (1,518,554)

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circular RNA, microtuble associated protein tau, siRNA