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Joseph R. Ecker

Salk Institute for Biological Studies

SCHOLARLY PAPERS

3

DOWNLOADS

110

TOTAL CITATIONS

0

Scholarly Papers (3)

1.

Cell-Type-Specific Transposable Element Demethylation and TAD Remodeling in the Aging Mouse Brain

Number of pages: 96 Posted: 21 Apr 2025
Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Harvard University, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, University of California, Berkeley, University of California, San Diego (UCSD), University of California, San Diego (UCSD), Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Massachusetts Institute of Technology (MIT) - Whitehead Institute for Biomedical Research, University of California, San Diego (UCSD), University of California, San Diego (UCSD), Salk Institute for Biological Studies and Independent
Downloads 50 (1,063,489)

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2.

Dissecting the Epigenome Dynamics in Human Immune Cells Upon Viral and Chemical Exposure by Multimodal Single-Cell Profiling

Number of pages: 48 Posted: 11 Sep 2025
Saarland University, Sun Yat-sen University (SYSU), Stanford University, Salk Institute for Biological Studies, Salk Institute for Biological Studies, Florida Institute for Human and Machine Cognition (IHMC), Florida Institute for Human and Machine Cognition (IHMC), Duke University - School of Medicine, Duke University, Duke University - School of Medicine, Duke University, Terasaki Institute for Biomedical Innovation, Duke University - Duke Global Health Institute, Duke University - Division of Infectious Diseases, Duke University - Division of Infectious Diseases, Emory University, Emory University, Stanford University, Stanford University, Stanford University - Department of Microbiology and Immunology, Government of the United States of America - Department of Health and Human Services, Vaccitech Ltd, Vaccitech Ltd, Salk Institute for Biological Studies, Saarland University, Stanford University - Department of Genetics and Independent
Downloads 34 (1,277,121)

Abstract:

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Single-cell epigenomics, pathogen exposure, human immune cells, infection, chromatin accessibility, DNA methylation, gene regulation

3.

Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex

Number of pages: 27 Posted: 07 Oct 2024
Allen Institute - Allen Institute for Brain Science, KU Leuven, University of California, San Diego (UCSD), Allen Institute - Allen Institute for Brain Science, KU Leuven, Allen Institute - Allen Institute for Brain Science, Allen Institute - Allen Institute for Brain Science, University of Toronto, University of Montreal, Westlake University, KU Leuven, University of California, San Diego (UCSD), KU Leuven, KU Leuven, KU Leuven, KU Leuven, KU Leuven, KU Leuven, Allen Institute - Allen Institute for Brain Science, KU Leuven, Allen Institute - Allen Institute for Brain Science, Allen Institute - Allen Institute for Brain Science, Westlake University, University of Montreal, University of Toronto, Allen Institute - Allen Institute for Brain Science, Allen Institute - Allen Institute for Brain Science, Allen Institute - Allen Institute for Brain Science, Salk Institute for Biological Studies, University of California, San Diego (UCSD), KU Leuven, Allen Institute - Allen Institute for Brain Science, Allen Institute - Allen Institute for Brain Science, Allen Institute - Allen Institute for Brain Science and Independent
Downloads 26 (1,385,945)

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AAV, enhancer, multiome, RNA-Seq, ATAC-seq, DNA methylation, HiC, mouse, primates, cortex, cell types, machine learning, benchmark, challenge