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Anna Yao Carroll

University of Pennsylvania

Philadelphia, PA 19104

United States

  • University of Pennsylvania

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Segmentation Matters: Cell Segmentation Challenge in Spatial Transcriptomics

Number of pages: 77 Posted: 08 Sep 2025
Huasheng Yu, Anna Yao Carroll, Kevin Shen, Nathan Wu, Hanying Yan, Jingwei Xiong, Miguel Francisco Mercado, Eric A. Kaiser, Mayank Gautam, Mingyao Li, Wenqin Luo, Penn High Precision Pain Center and Sneak Peek Administrator
University of Pennsylvania - Department of Neuroscience, University of Pennsylvania, University of Pennsylvania, University of Pennsylvania, University of Pennsylvania, University of California, Davis, University of Pennsylvania, University of Pennsylvania, University of Pennsylvania - Department of Neuroscience, University of Pennsylvania - Department of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania - Department of Neuroscience, Independent and Independent
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spatial transcriptomics, accurate cell segmentation, systematic evaluation, 10x Xenium, BAYSOR, DBSCAN, CELLPOSE, YOLO, manual segmentation, multi-modal imaging datasets