Computational Analysis of Solanum Lycopersicum (Tomato) Lycopersicones Culentum Representing a Large Range of Intraspecific Variability

International Journal of Bio-Technology and Research (IJBTR) ISSN (P):2249-6858; ISSN (E):2249-796X Vol. 8, Issue 1, Feb 2018, 1-6

6 Pages Posted: 2 Jul 2018

See all articles by Uma Kumari

Uma Kumari

Jharkhand Rai University

Ashok Kumar Choudhary

Ranchi University - Department of Botany

Date Written: February 28, 2018

Abstract

Genome analysis and annotation using genome from the libraries. All of these crops are members of the Solanaceae or nightshade family, one of the world’s most important vegetable plant families in terms of both economic value and production volume. The most widely programs for global multiple sequence alignment are from the Clustal series of programs. The tomato genomic resources database is an online and interactive relational database, developed using open sources software. If two sequences is an alignment share a common ancestors, mismatches can be interpreted as a point mutation. Local alignments are more useful for dissimilar sequence motif within their larger sequence. BLAST has a bio-informatics algorithm to align sequence as if they were found in the database search. When an expectation value is increase of default value. The (TGRD), the tomato genomic resources database is an online and interactive relational database, developed using open sources software. Tomato is the model for a number of biological studies important to agriculture, such as fruit development and ripening, disease resistance and biochemical pathway of important nutrient. The coding sequence is the actual region of DNA that is translated to form proteins. While the ORF may contain introns as well, the CDS refers to those nucleotides (exons) that can be divided into cordons. In sequence, alignment is a way of arranging the sequence of DNA, RNA, or protein to identify the functional, structural or evolutionary relationship between the sequence. If two sequences in an alignment share a common ancestors, mismatches can be interpreted as a point mutation. FASTA format is a text based format for representing either nucleotide sequence or peptide sequence, in which nucleotide or amino acid is represented using single letter code. Sequence homology is a general term that indicates evolutionary relatedness among sequence. Sequence similarity is a substitution with similar chemical properties. The Clustal Colored alignment also has the colour option in the output results. In addition to maintaining the gene bank nucleic acid, sequence database, NCBI provides data retrieval system and computational resources for the analysis of gene bank data and variety of other biological data made available through NCBI.

Keywords: Bioinformatics, Genome Database, TGRD (Tomato Genomic Resources Database), Sequence Analysis, Data Compiled, Sequence Alignment & Solanum Lycopersicum

Suggested Citation

Kumari, Uma and Kumar Choudhary, Ashok Kumar, Computational Analysis of Solanum Lycopersicum (Tomato) Lycopersicones Culentum Representing a Large Range of Intraspecific Variability (February 28, 2018). International Journal of Bio-Technology and Research (IJBTR) ISSN (P):2249-6858; ISSN (E):2249-796X Vol. 8, Issue 1, Feb 2018, 1-6 . Available at SSRN: https://ssrn.com/abstract=3195680

Uma Kumari (Contact Author)

Jharkhand Rai University ( email )

Road No 6
Ashok Nagar
Ranchi, 834002
India

Ashok Kumar Kumar Choudhary

Ranchi University - Department of Botany ( email )

Ranchi, Jharkhand
India

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