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In vivo CRISPR Screens Identify E3 Ligase Cop1 as a Modulator of Macrophage Infiltration and Cancer Immunotherapy Target

65 Pages Posted: 10 Dec 2020 Publication Status: Published

See all articles by Xiaoqing Wang

Xiaoqing Wang

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

Collin Tokheim

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

Binbin Wang

Dana-Farber Cancer Institute - Department of Data Science

Shengqing Stan Gu

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

Qin Tang

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

Yihao Li

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

Nicole Traugh

Dana-Farber Cancer Institute - Department of Data Science

Yi Zhang

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

Ziyi Li

Dana-Farber Cancer Institute - Department of Data Science

Boning Zhang

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

Jingxin Fu

Dana-Farber Cancer Institute - Department of Data Science

Tengfei Xiao

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics; Dana-Farber Cancer Institute - Department of Medical Oncology

Wei Li

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

Clifford A. Meyer

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

Peng Jiang

Harvard T.H. Chan School of Public Health - Department of Biostatistics

Jun Chu

Dana-Farber Cancer Institute - Department of Data Science

Paloma Cejas

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

Klothilda Lim

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

Henry Long

Dana-Farber/Harvard Cancer Center - Center for Functional Cancer Epigenetics

Myles Brown

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics; Dana-Farber Cancer Institute - Department of Medical Oncology; Harvard University - Department of Medicine

Xiaole Shirley Liu

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

More...

Abstract

Despite remarkable clinical efficacies of immune checkpoint blockade (ICB) in cancer treatment, ICB benefits in triple-negative breast cancer (TNBC) remain limited. Through pooled in vivo CRISPR knockout (KO) screens in syngeneic TNBC mouse models, we found that inhibition of the E3 ubiquitin ligase Cop1 in cancer cells decreases the secretion of macrophage-associated chemokines, reduces tumor macrophage infiltration, and shows synergy in anti-tumor immunity with ICB. Transcriptomics, epigenomics, and proteomics analyses revealed Cop1 functions through proteasomal degradation of the C/ebpδ protein. Cop1 substrate Trib2 functions as a scaffold linking Cop1 and C/ebpδ, which leads to polyubiquitination of C/ebpδ. Cop1 inhibition stabilizes C/ebpδ to suppress the expression of macrophage chemoattractant genes. Our integrated approach implicates Cop1 as a target for improving cancer immunotherapy efficacy by regulating chemokine secretion and macrophage levels in the TNBC tumor microenvironment.

Keywords: Triple-negative breast cancer; CRISPR screening; Immunotherapy; E3 ubiquitin ligase; Cop1; C/ebpδ

Suggested Citation

Wang, Xiaoqing and Tokheim, Collin and Wang, Binbin and Gu, Shengqing Stan and Tang, Qin and Li, Yihao and Traugh, Nicole and Zhang, Yi and Li, Ziyi and Zhang, Boning and Fu, Jingxin and Xiao, Tengfei and Li, Wei and Meyer, Clifford A. and Jiang, Peng and Chu, Jun and Cejas, Paloma and Lim, Klothilda and Long, Henry and Brown, Myles and Liu, Xiaole Shirley, In vivo CRISPR Screens Identify E3 Ligase Cop1 as a Modulator of Macrophage Infiltration and Cancer Immunotherapy Target. Available at SSRN: https://ssrn.com/abstract=3746625 or http://dx.doi.org/10.2139/ssrn.3746625
This version of the paper has not been formally peer reviewed.

Xiaoqing Wang

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

450 Brookline Avenue
Boston, MA 02115
United States

Collin Tokheim

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics ( email )

450 Brookline Avenue
Boston, MA 02115
United States

Binbin Wang

Dana-Farber Cancer Institute - Department of Data Science

450 Brookline Avenue
Boston, MA 02215
United States

Shengqing Stan Gu

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics ( email )

450 Brookline Avenue
Boston, MA 02115
United States

Qin Tang

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

450 Brookline Avenue
Boston, MA 02115
United States

Yihao Li

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics ( email )

450 Brookline Avenue
Boston, MA 02115
United States

Nicole Traugh

Dana-Farber Cancer Institute - Department of Data Science ( email )

450 Brookline Avenue
Boston, MA 02215
United States

Yi Zhang

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

450 Brookline Avenue
Boston, MA 02115
United States

Ziyi Li

Dana-Farber Cancer Institute - Department of Data Science

450 Brookline Avenue
Boston, MA 02215
United States

Boning Zhang

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

450 Brookline Avenue
Boston, MA 02115
United States

Jingxin Fu

Dana-Farber Cancer Institute - Department of Data Science ( email )

450 Brookline Avenue
Boston, MA 02215
United States

Tengfei Xiao

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

450 Brookline Avenue
Boston, MA 02115
United States

Dana-Farber Cancer Institute - Department of Medical Oncology

450 Brookline Avenue
Boston, MA 02115
United States

Wei Li

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics

450 Brookline Avenue
Boston, MA 02115
United States

Clifford A. Meyer

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics ( email )

450 Brookline Avenue
Boston, MA 02115
United States

Peng Jiang

Harvard T.H. Chan School of Public Health - Department of Biostatistics

677 Huntington Avenue
Boston, MA MA 02115
United States

Jun Chu

Dana-Farber Cancer Institute - Department of Data Science

450 Brookline Avenue
Boston, MA 02215
United States

Paloma Cejas

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics ( email )

450 Brookline Avenue
Boston, MA 02115
United States

Klothilda Lim

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics ( email )

450 Brookline Avenue
Boston, MA 02115
United States

Henry Long

Dana-Farber/Harvard Cancer Center - Center for Functional Cancer Epigenetics

450 Brookline Avenue
Boston, MA 02115
United States

Myles Brown

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics ( email )

450 Brookline Avenue
Boston, MA 02115
United States

Dana-Farber Cancer Institute - Department of Medical Oncology

450 Brookline Avenue
Boston, MA 02115
United States

Harvard University - Department of Medicine ( email )

Boston, MA 02115
United States

Xiaole Shirley Liu (Contact Author)

Dana-Farber Cancer Institute - Center for Functional Cancer Epigenetics ( email )

450 Brookline Avenue
Boston, MA 02115
United States

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