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Deep Learning-Based Classi Fi Cation of Cancer Cell in Leptomeningeal Metastasis on Cytomorphologic Features of CSF

42 Pages Posted: 20 May 2021

See all articles by Wenjin Yu

Wenjin Yu

Government of the People's Republic of China - Department of Neurology

Gang Zhao

Government of the People's Republic of China - Department of Neurology

Yangyang Liu

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory

Haofan Huang

Shenzhen University - School of Biomedical Engineering

Jingwen Li

Xiamen University - School of Medicine

Yunsong Zhao

Government of the People's Republic of China - Department of Neurology

Haojia Liu

Yan'an University - Department of Neurology

Xiaofeng Yao

Yan'an University - Department of Neurology

Guoxun Zhang

Yan'an University - Department of Neurology

Zhen Xie

Northwest University (China) - College of Life Science & Medicine

Di Zhao

Government of the People's Republic of China - Department of Neurology

Jiangyun Yan

Government of the People's Republic of China - Department of Neurology

Haijun Zhang

Government of the People's Republic of China - Department of Neurology

Junchao Lv

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory

Luyue Jiang

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory

Heping Wu

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory

Minhui Zhou

Government of the People's Republic of China - Department of Neurology

Tingting Liu

Government of the People's Republic of China - Department of Neurology

Ying He

Government of the People's Republic of China - Department of Neurology

Ting Bian

Government of the People's Republic of China - Department of Neurology

Wen Dai

Government of the People's Republic of China - Department of Neurology

Wei Ren

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory

Gang Niu

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory

Yi Gao

Shenzhen University - School of Biomedical Engineering

More...

Abstract

Background: Difficulty diagnoses of leptomeningeal metastasis and lack of typical symptoms are considerable challenges in the clinical. As CSF a gold standard in LM, it is necessary to establish a deep learning model to classify cancer cells in CSF to facility doctor early diagnosis.

Method: CNN models based on ResNet-Inception-V2 or ResNet-50 are used to training cells in CSF, which is evaluated by average precision or accuracy. Besides, our research comprised the interpretation of 42 doctors with different experience and CNN in the human-machine test to validate CNN's performance.

Results: The precision of cancer cells was over 95% in the CNN1 model. In the human-machine test, the cell classification model's(CNN1) accuracy was close to experts and higher than other doctors. The cancer cell classification model's accuracy (CNN2) is 10% higher than that of experts, and the time-consuming is only 1/3 of that of an expert. We successfully achieved cell training in the small cell dataset in an 8-way cell classification model(CNN3), which overall accuracy is 90%.

Explanation: Deep learning can be widely used cerebrospinal fluid cytology pictures for classification. For difficult cancer classify task, CNN accuracy is higher than that of specialist doctors, and its performance is better than that of junior doctors and intern.

Funding: The project described was supported by National research and development precision medicine (Program 2016YFC0904500), National Science and Technology Gold Project (81671185), Natural Science Basic Research Program of Shaanxi (Program No. 2019JQ-251), Hospital-level project of Xi'an International Medical Center (Program No. 2020ZD007).

Declaration of Interest: The authors declare that they have no conflicts of interests.

Ethical Approval: The study was conducted in accordance with Declaration of Helsinki and approved by the Institutional Review Boards at Xijing Hospital.

Keywords: CNN, LM, cytology, cancer cell

Suggested Citation

Yu, Wenjin and Zhao, Gang and Liu, Yangyang and Huang, Haofan and Li, Jingwen and Zhao, Yunsong and Liu, Haojia and Yao, Xiaofeng and Zhang, Guoxun and Xie, Zhen and Zhao, Di and Yan, Jiangyun and Zhang, Haijun and Lv, Junchao and Jiang, Luyue and Wu, Heping and Zhou, Minhui and Liu, Tingting and He, Ying and Bian, Ting and Dai, Wen and Ren, Wei and Niu, Gang and Gao, Yi, Deep Learning-Based Classi Fi Cation of Cancer Cell in Leptomeningeal Metastasis on Cytomorphologic Features of CSF. Available at SSRN: https://ssrn.com/abstract=3850010 or http://dx.doi.org/10.2139/ssrn.3850010

Wenjin Yu (Contact Author)

Government of the People's Republic of China - Department of Neurology ( email )

Xi'an
China

Gang Zhao

Government of the People's Republic of China - Department of Neurology ( email )

Xi'an
China

Yangyang Liu

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory

China

Haofan Huang

Shenzhen University - School of Biomedical Engineering ( email )

3688 Nanhai Road, Nanshan District
Shenzhen, 518060
China

Jingwen Li

Xiamen University - School of Medicine

Xiamen, Fujian 361005
China

Yunsong Zhao

Government of the People's Republic of China - Department of Neurology

Xi'an
China

Haojia Liu

Yan'an University - Department of Neurology

China

Xiaofeng Yao

Yan'an University - Department of Neurology ( email )

China

Guoxun Zhang

Yan'an University - Department of Neurology ( email )

China

Zhen Xie

Northwest University (China) - College of Life Science & Medicine

China

Di Zhao

Government of the People's Republic of China - Department of Neurology

Xi'an
China

Jiangyun Yan

Government of the People's Republic of China - Department of Neurology ( email )

Xi'an
China

Haijun Zhang

Government of the People's Republic of China - Department of Neurology

Xi'an
China

Junchao Lv

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory ( email )

China

Luyue Jiang

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory

China

Heping Wu

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory ( email )

China

Minhui Zhou

Government of the People's Republic of China - Department of Neurology

Xi'an
China

Tingting Liu

Government of the People's Republic of China - Department of Neurology

Xi'an
China

Ying He

Government of the People's Republic of China - Department of Neurology

Xi'an
China

Ting Bian

Government of the People's Republic of China - Department of Neurology ( email )

Xi'an
China

Wen Dai

Government of the People's Republic of China - Department of Neurology

Xi'an
China

Wei Ren

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory ( email )

China

Gang Niu

Xi'an Jiaotong University (XJTU) - Electronic Materials Research Laboratory ( email )

China

Yi Gao

Shenzhen University - School of Biomedical Engineering ( email )

3688 Nanhai Road, Nanshan District
Shenzhen, Guangdong 518037
China

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