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Predicting Dying: Metabolomic Changes, a Model and the Dying Process in Patients with Lung Cancer

26 Pages Posted: 22 May 2023

See all articles by Seamus Coyle

Seamus Coyle

University of Liverpool - Liverpool Head and Neck Cancer Centre

Elinor Chapman

University of Liverpool - Institute of Systems, Molecular and Integrative Biology

David Michael Hughes

University of Liverpool - Department of Health Data Science; University of Liverpool

James Baker

University of Liverpool - Institute of Systems, Molecular and Integrative Biology

Rachael Slater

University of Liverpool - Institute of Systems, Molecular and Integrative Biology

Andrew S. Davison

Liverpool University Hospitals NHS Foundation Trust - Department of Clinical Biochemistry and Metabolic Medicine

Brendan Norman

University of Liverpool - Institute of Life Course and Medical Sciences

Ivayla Roberts

University of Liverpool - Institute of Systems, Molecular and Integrative Biology

Amara C. Nwosu

Lancaster University - Lancaster Medical School

Mark T. Boyd

University of Liverpool - Liverpool Head and Neck Cancer Centre

Catriona R. Mayland

University of Sheffield - Department of Oncology & Metabolism

Douglas Kell

Stellenbosch University - Department of Physiological Sciences

Stephen Masson

University of Liverpool - Palliative Care Unit

John Ellershaw

Liverpool University Hospitals NHS Foundation Trust - Academic Palliative & End of Life Care Department

Chris Probert

University of Liverpool - Institute of Systems, Molecular and Integrative Biology

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Abstract

Background: Accurately recognising that a person may be dying is central for improving their experience of care. Yet recognising dying is difficult and predicting dying frequently inaccurate.

Methods: Urine samples from patients (n=112 and 49, training and validation cohorts, respectively)) with lung cancer were analysed using high resolution mass spectrometry. Cox lasso regression was engaged to develop a multivariable model predicting the probability of survival within the last 30 days of life. ANOVA and volcano plot analysis demonstrated metabolites that changed in the last weeks of life. Further analysis identified potential biological pathways affected.

Findings: A model predicting time to death using 7 metabolites had excellent accuracy in the training cohort (AUC = 0×85, 0×85, 0×88 and 0×86 on days 5, 10, 20 and 30) and validation cohort (AUC = 0×86, 0×83, 0×90, 0×86 on days 5, 10, 20 and 30). The model enabled classification of patients at low, medium and high risk of dying on a Kaplan-Meier survival curve. 124 metabolites changed. ANOVA analysis identified 93 metabolites and volcano plot analysis 85 metabolites. 53 metabolites changed using both approaches. Pathways altered in the last weeks included those associated with decreased oral intake, muscle loss, decreased RNA and protein synthesis, mitochondrial dysfunction, disrupted β-oxidation and one carbon metabolism. Epinephrine and cortisol increased in the last 2 weeks and week respectively.

Interpretation: Metabolomic analysis identified metabolites and their associated pathways that change in the last days of life in patients with lung cancer. Prognostic tests, based on the metabolites identified in this study, could aid clinicians in the early recognition of people who may be dying, and have the potential to influence clinical practice and improve the care of dying patients.

Funding: This research received a Wellcome Trust Seed award for Science (202022/Z/16/Z), North West Cancer Research award (SI2018.11), University of Liverpool Enterprise Investment Fund award and Novo Nordisk Foundation (grant NNF20CC0035580).

Declaration of Interest: None.

Ethical Approval: Ethical approval was provided by North Wales (West) Research Ethics Committee (REC reference 15/WA/0464).

Keywords: lung cancer, dying, urine, biomarkers, palliative, metabolomics

Suggested Citation

Coyle, Seamus and Chapman, Elinor and Hughes, David Michael and Baker, James and Slater, Rachael and Davison, Andrew S. and Norman, Brendan and Roberts, Ivayla and Nwosu, Amara C. and Boyd, Mark T. and Mayland, Catriona R. and Kell, Douglas and Mason, Stephen and Ellershaw, John and Probert, Chris, Predicting Dying: Metabolomic Changes, a Model and the Dying Process in Patients with Lung Cancer. Available at SSRN: https://ssrn.com/abstract=4453379 or http://dx.doi.org/10.2139/ssrn.4453379

Seamus Coyle (Contact Author)

University of Liverpool - Liverpool Head and Neck Cancer Centre ( email )

Elinor Chapman

University of Liverpool - Institute of Systems, Molecular and Integrative Biology ( email )

David Michael Hughes

University of Liverpool - Department of Health Data Science

University of Liverpool ( email )

James Baker

University of Liverpool - Institute of Systems, Molecular and Integrative Biology ( email )

Rachael Slater

University of Liverpool - Institute of Systems, Molecular and Integrative Biology ( email )

Andrew S. Davison

Liverpool University Hospitals NHS Foundation Trust - Department of Clinical Biochemistry and Metabolic Medicine ( email )

Brendan Norman

University of Liverpool - Institute of Life Course and Medical Sciences ( email )

Ivayla Roberts

University of Liverpool - Institute of Systems, Molecular and Integrative Biology ( email )

Amara C. Nwosu

Lancaster University - Lancaster Medical School ( email )

Mark T. Boyd

University of Liverpool - Liverpool Head and Neck Cancer Centre ( email )

Catriona R. Mayland

University of Sheffield - Department of Oncology & Metabolism ( email )

Douglas Kell

Stellenbosch University - Department of Physiological Sciences ( email )

South Africa

Stephen Mason

University of Liverpool - Palliative Care Unit ( email )

John Ellershaw

Liverpool University Hospitals NHS Foundation Trust - Academic Palliative & End of Life Care Department ( email )

Chris Probert

University of Liverpool - Institute of Systems, Molecular and Integrative Biology ( email )