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Critical COVID-19 Unveils the Link between Viral Particle Blood Dissemination and Prolonged Type I Interferon

44 Pages Posted: 8 May 2024

See all articles by Kahina Saker

Kahina Saker

Hospices Civils de Lyon - Laboratoire de Virologie

Marine Mommert

Lyon Sud Hospital

Guy Oriol

Lyon Sud Hospital

Laurence Generenaz

Lyon Sud Hospital

Valérie Cheynet

Lyon Sud Hospital

Antonin Bal

Hospices Civils de Lyon - Laboratoire de Virologie

Paul Bastard

University of Paris - Laboratory of Human Genetics of Infectious Diseases; Aix-Marseille University - Etablissement Français du Sang (EFS)

Jean Laurent Casanova

University of Paris - Laboratory of Human Genetics of Infectious Diseases

Emmanuel Roux

Université Lyon 1

Karen Brengel-Pesce

Lyon Sud Hospital - Joint Research Unit Civils Hospices of Lyon-bioMérieux

Aurore Fleurie

Lyon Sud Hospital

Sylvie Pons

Lyon Sud Hospital

Cécile Barnel

Hospices Civils de Lyon

Bouchra Mokdad

Hospices Civils de Lyon - Laboratoire de Virologie

Florent Wallet

Hospices Civils de Lyon - Medical Intensive Care Unit

Olivier Terrier

International Associated Laboratory RespiVir (LIA VirPath-LVCM France-Canada); Université de Lyon - Université Claude Bernard Lyon 1

Jean-Christophe Richard

Hospices Civils de Lyon - Service de Médecine Intensive-Réanimation

Sophie Assant

Hospices Civils de Lyon - Laboratoire de Virologie

More...

Abstract

Background: A significant portion of patients suffering from hypoxemic SARS-CoV-2 pneumonia, insufficiently controlled by early type I interferon (IFN) immunity in respiratory epithelium, experienced a delayed and prolonged IFN response during hospitalization. Employing a comprehensive approach, we aimed to identify host and viral factors associated with severe COVID-19 in subjects with type I IFN response.

Methods: Prospective collection of blood and nasal samples from mild and critical COVID-19 patients allowed us to compare N-antigenemia, humoral immunity, pulmonary and endothelial damage, virological parameters via metagenomics, and innate immune responses through circulating proteins and transcriptomic markers.

Findings: Over 89% of critically-ill patients showed plasma N-protein positivity at ICU admission, with the strongest correlation found between viral particle blood dissemination and a sustained type I IFN response. These results suggest that viral particles may trigger systemic type I IFN responses, potentially explaining delayed responses in critically-ill patients. Using a human primary respiratory epithelium model, we demonstrated that sustained type I IFN pathway activation can disrupt the respiratory epithelium, facilitating the virus's transition from the respiratory compartment to circulation, thereby involving the host in a detrimental cycle.

Interpretation: These findings underscore the critical importance of the timing and duration of type I IFN immunity in COVID-19.

Funding: This study received funding from the Agence Nationale de Recherches sur le Sida et les Hépatites Virales (ANRS-0154) and to ANR (ANR-RHU Program ANR-21- RHUS-08 (COVIFERON)) through France 2030 program.

Declaration of Interest: MM, VC, LG, AF, SP, GO, and KBP are employees of bioMérieux SA, an in vitro diagnostic company.

Ethical Approval: All participants have been included in clinical studies conducted in Hospices Civils de Lyon, Lyon, France, that complied to French national data protection agency requirements and approved by ethical committees. Written informed consent was obtained from all participants suffering from a mild form of COVID-19 and opposition to use of personal data was sought from the critically-ill patients or their representative in agreement with French regulations.

Keywords: SARS-CoV-2, type I IFN, N-antigenemia, critical illness, innate immune response

Suggested Citation

Saker, Kahina and Mommert, Marine and Oriol, Guy and Generenaz, Laurence and Cheynet, Valérie and Bal, Antonin and Bastard, Paul and Casanova, Jean Laurent and Roux, Emmanuel and Brengel-Pesce, Karen and Fleurie, Aurore and Pons, Sylvie and Barnel, Cécile and Mokdad, Bouchra and Wallet, Florent and Terrier, Olivier and Richard, Jean-Christophe and Assant, Sophie, Critical COVID-19 Unveils the Link between Viral Particle Blood Dissemination and Prolonged Type I Interferon. Available at SSRN: https://ssrn.com/abstract=4819251 or http://dx.doi.org/10.2139/ssrn.4819251

Kahina Saker

Hospices Civils de Lyon - Laboratoire de Virologie ( email )

France

Marine Mommert

Lyon Sud Hospital

Guy Oriol

Lyon Sud Hospital ( email )

Laurence Generenaz

Lyon Sud Hospital ( email )

Valérie Cheynet

Lyon Sud Hospital ( email )

Antonin Bal

Hospices Civils de Lyon - Laboratoire de Virologie ( email )

103 Grande Rue de la CroixRousse
Lyon, F-69317
France

Paul Bastard

University of Paris - Laboratory of Human Genetics of Infectious Diseases ( email )

France

Aix-Marseille University - Etablissement Français du Sang (EFS) ( email )

Jean Laurent Casanova

University of Paris - Laboratory of Human Genetics of Infectious Diseases ( email )

Emmanuel Roux

Université Lyon 1 ( email )

Karen Brengel-Pesce

Lyon Sud Hospital - Joint Research Unit Civils Hospices of Lyon-bioMérieux ( email )

Pierre-Bénite, 69310
France

Aurore Fleurie

Lyon Sud Hospital ( email )

Sylvie Pons

Lyon Sud Hospital ( email )

Cécile Barnel

Hospices Civils de Lyon ( email )

3 Quai des Célestins
Lyon, 69002
France

Bouchra Mokdad

Hospices Civils de Lyon - Laboratoire de Virologie ( email )

103 Grande Rue de la CroixRousse
Lyon, F-69317
France

Florent Wallet

Hospices Civils de Lyon - Medical Intensive Care Unit ( email )

France

Olivier Terrier

International Associated Laboratory RespiVir (LIA VirPath-LVCM France-Canada) ( email )

Université de Lyon - Université Claude Bernard Lyon 1 ( email )

Lyon, 69008
France

Jean-Christophe Richard

Hospices Civils de Lyon - Service de Médecine Intensive-Réanimation ( email )

Sophie Assant (Contact Author)

Hospices Civils de Lyon - Laboratoire de Virologie ( email )

103 Grande Rue de la CroixRousse
Lyon, F-69317
France

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