Discovery of Ca9-005 as a New Carbonic Anhydrase 9 Inhibitor Using a DNA Encoded-Libraries

11 Pages Posted: 17 Apr 2025

See all articles by byumseok koh

byumseok koh

affiliation not provided to SSRN

Ju Ho Lee

affiliation not provided to SSRN

Sung Bum Park

affiliation not provided to SSRN

Jiwoo Kim

affiliation not provided to SSRN

Kyoung Jin Choi

affiliation not provided to SSRN

Jeonghui Im

affiliation not provided to SSRN

Byungho Lim

affiliation not provided to SSRN

Dae-Soo Kim

Korea University of Science and Technology (UST) - Department of Bioinformatics; Korea University of Science and Technology (UST) - Department of Environmental Disease Research Center

Byungwook Lee

affiliation not provided to SSRN

Sunjong Yu

affiliation not provided to SSRN

Nam-Chul Cho

Korea Research Institute of Chemical Technology (KRICT)

Doyoun Kim

affiliation not provided to SSRN

Yuno Lee

affiliation not provided to SSRN

Hyun Jin Kim

affiliation not provided to SSRN

Ki Young Kim

affiliation not provided to SSRN

Jung-Nyoung Heo

affiliation not provided to SSRN

Abstract

This study utilized DNA-encoded library (DEL) screening to identify novel inhibitors of carbonic anhydrase 9 (CA9), a key cancer target. Among the identified compounds, CA9-005 exhibited strong inhibitory activity and reduced cancer cell viability while CA9-061 and CA9-062 showed high binding affinities but limited enzymatic inhibition. Biolayer interferometry confirmed CA9-005's direct interaction with CA9, supported by structural modeling. These findings highlight the potential of DEL screening for drug discovery and establish CA9-005 as a promising anticancer candidate, warranting further structural and therapeutic optimization.

Keywords: DNA-Encoded libraries, DEL, carbonic anhydrase 9, screening, cancer inhibition

Suggested Citation

koh, byumseok and Lee, Ju Ho and Park, Sung Bum and Kim, Jiwoo and Choi, Kyoung Jin and Im, Jeonghui and Lim, Byungho and Kim, Dae-Soo and Lee, Byungwook and Yu, Sunjong and Cho, Nam-Chul and Kim, Doyoun and Lee, Yuno and Kim, Hyun Jin and Kim, Ki Young and Heo, Jung-Nyoung, Discovery of Ca9-005 as a New Carbonic Anhydrase 9 Inhibitor Using a DNA Encoded-Libraries. Available at SSRN: https://ssrn.com/abstract=5218904 or http://dx.doi.org/10.2139/ssrn.5218904

Byumseok Koh (Contact Author)

affiliation not provided to SSRN ( email )

No Address Available

Ju Ho Lee

affiliation not provided to SSRN ( email )

No Address Available

Sung Bum Park

affiliation not provided to SSRN ( email )

No Address Available

Jiwoo Kim

affiliation not provided to SSRN ( email )

No Address Available

Kyoung Jin Choi

affiliation not provided to SSRN ( email )

No Address Available

Jeonghui Im

affiliation not provided to SSRN ( email )

No Address Available

Byungho Lim

affiliation not provided to SSRN ( email )

No Address Available

Dae-Soo Kim

Korea University of Science and Technology (UST) - Department of Bioinformatics ( email )

Korea, Republic of (South Korea)

Korea University of Science and Technology (UST) - Department of Environmental Disease Research Center ( email )

Korea, Republic of (South Korea)

Byungwook Lee

affiliation not provided to SSRN ( email )

No Address Available

Sunjong Yu

affiliation not provided to SSRN ( email )

No Address Available

Nam-Chul Cho

Korea Research Institute of Chemical Technology (KRICT) ( email )

Doyoun Kim

affiliation not provided to SSRN ( email )

No Address Available

Yuno Lee

affiliation not provided to SSRN ( email )

No Address Available

Hyun Jin Kim

affiliation not provided to SSRN ( email )

No Address Available

Ki Young Kim

affiliation not provided to SSRN ( email )

No Address Available

Jung-Nyoung Heo

affiliation not provided to SSRN ( email )

No Address Available

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