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Justin Shaffer

University of California, San Diego (UCSD) - Department of Pediatrics

San Diego, CA 92093

United States

SCHOLARLY PAPERS

4

DOWNLOADS

360

TOTAL CITATIONS

3

Scholarly Papers (4)

1.

Culture-Independent Meta-Pangenomics Enabled by Long-Read Metagenomics Reveals Novel Associations with Pediatric Undernutrition

Number of pages: 35 Posted: 20 Sep 2024
Salk Institute for Biological Studies, Salk Institute for Biological Studies, University of California, San Diego (UCSD), Baylor College of Medicine, Kamuzu University of Health Sciences - School of Global and Public Health (SOGAPH), Baylor College of Medicine, Salk Institute for Biological Studies, Salk Institute for Biological Studies, University of California, San Diego (UCSD), University of California, San Diego (UCSD), University of California, San Diego (UCSD) - Department of Pediatrics, Salk Institute for Biological Studies, Salk Institute for Biological Studies, University of California San Diego Halıcıoğlu Data Science Institute, Washington University in St. Louis, Washington University in St. Louis - Department of Pediatrics, Salk Institute for Biological Studies and Independent
Downloads 174 (433,188)

Abstract:

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2.

Targeted Activation of Enteric Neurons Shapes the Gut Environment of Mice

Number of pages: 53 Posted: 29 Oct 2020
California Institute of Technology (Caltech) - Division of Biology and Biological Engineering, California Institute of Technology (Caltech) - Division of Biology and Biological Engineering, The Scripps Research Institute - Department of Molecular Medicine, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, California Institute of Technology (Caltech) - Division of Biology and Biological Engineering, California Institute of Technology (Caltech) - Division of Biology and Biological Engineering, California Institute of Technology (Caltech) - Division of Biology and Biological Engineering, California Institute of Technology (Caltech) - Division of Biology and Biological Engineering, California Institute of Technology (Caltech) - Division of Biology and Biological Engineering, California Institute of Technology (Caltech) - Division of Biology and Biological Engineering, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Department of Pediatrics, The Scripps Research Institute - Department of Molecular Medicine, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Department of Computer Science & Engineering, California Institute of Technology (Caltech) - Division of Biology and Biological Engineering and California Institute of Technology (Caltech) - Division of Biology and Biological Engineering
Downloads 104 (669,451)

Abstract:

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3.

Reference Data Based Insights Expand Understanding of Human Metabolomes

Number of pages: 38 Posted: 09 Sep 2020
University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, San Diego Zoo Global - Reproductive Sciences, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Department of Bioengineering, University of California, San Diego (UCSD) - Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego (UCSD) - Center for Microbiome Innovation, University of California, San Diego (UCSD) - Department of Pediatrics, UCSD School of Medicine - Division of Rheumatology, Allergy and Immunology, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Department of Pediatrics, University of Minnesota - St. Paul - BioTechnology Institute, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Department of Computer Science & Engineering, University of California, San Diego (UCSD) - Department of Pediatrics, University of Colorado at Boulder - Department of Integrative Physiology, Servicio Autónomo Centro Amazónico de Investigación y Control de Enfermedades Tropicales Simón Bolívar, University of Colorado at Boulder - Department of Integrative Physiology, University of California, San Diego (UCSD) - Department of Pediatrics, Wake Forest School of Medicine - Department of Pediatrics, Michigan State University - Department of Animal Science, University of São Paulo (USP) - Department of Pharmacology, Federal University of Bahia (UFBA) - Multidisciplinary Health Institute, University of São Paulo (USP) - NPPNS, University of São Paulo (USP) - Department of Pharmacology, University of São Paulo (USP) - Department of Pharmacology, University of São Paulo (USP) - Department of Internal Medicine, University of São Paulo (USP) - Ribeirão Preto Medical School, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, University of California, San Diego (UCSD) - Department of Neurology, University of California, San Diego (UCSD) - Division of Gastroenterology, The Scripps Research Institute - Department of Molecular Medicine, University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center, UCSD School of Medicine - Division of Rheumatology, Allergy and Immunology, University of California, San Diego (UCSD) - Department of Pediatrics, University of Cincinnati - Division of Neonatology, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Division of Pediatric Hospital Medicine, University of Colorado at Boulder - Department of Integrative Physiology, Rutgers, The State University of New Jersey - Department of Biochemistry and Microbiology, Washington University in St. Louis - Department of Pediatrics, University of California, San Diego (UCSD) - Department of Medicine, University of California, San Diego (UCSD) - Department of Neurosciences, University of São Paulo (USP) - NPPNS, University of California, San Diego (UCSD) - Department of Cellular & Molecular Medicine, University of California, San Diego (UCSD) - Center for Microbiome Innovation, University of California, San Diego (UCSD) - Division of Biological Sciences, University of California, San Diego (UCSD) - Department of Computer Science & Engineering and University of California, San Diego (UCSD) - Collaborative Mass Spectrometry Innovation Center
Downloads 48 (1,085,743)
Citation 2

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4.

Comprehensive Evaluation of Shotgun Metagenomics, Amplicon Sequencing and Harmonization of Said Platforms for Epidemiological Studies Using the Large Multi-Center HCHS/SOL Cohort

Number of pages: 31 Posted: 26 Aug 2022
Yeshiva University - Department of Pediatrics, Yeshiva University - Department of Epidemiology & Population Health, University of California, San Diego (UCSD) - Department of Pediatrics, University of California, San Diego (UCSD) - Department of Pediatrics, Yeshiva University - Department of Pediatrics, University of California, San Diego (UCSD) - Center for Microbiome Innovation, University of California, San Diego (UCSD) - Department of Pediatrics, University of Miami - Department of Psychology, San Diego State University - Division of Health Promotion and Behavioral Science, University of Illinois at Chicago - Department of Medicine, University of Minnesota - Minneapolis - Department of Laboratory Medicine and Pathology, University of California, San Diego (UCSD) - Department of Pediatrics, New York University (NYU) - Department of Population Health, New York University (NYU) - Department of Population Health and Yeshiva University - Department of Pediatrics
Downloads 34 (1,263,026)
Citation 1

Abstract:

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amplicon, shotgun, metagenomic, harmonization, meta-analysis, epidemiology, HCHS/SOL, strain, next-generation sequencing, GOLD, Bacteria, fungi, viruses, 16S rRNA, ITS1