Medical Research Council Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London, Université Laval, Imperial College London - Medical Research Council Centre for Global Infectious Disease Analysis, Department of Pathology, Johns Hopkins University School of Medicine, McGill University - Epidemiology, Biostatistics, & Occupational Health, Fred Hutchinson Cancer Research Center - Vaccine and Infectious Disease Division, Johns Hopkins University - Department of Pathology and Imperial College London - Medical Research Council Centre for Global Infectious Disease Analysis

University of Oxford - Big Data Institute, University of Oxford - Big Data Institute, University of Oxford - Big Data Institute, University of Oxford - Big Data Institute, Zambia AIDS Related Tuberculosis (ZAMBART), Zambia AIDS Related Tuberculosis (ZAMBART), Zambia AIDS Related Tuberculosis (ZAMBART), University of Oxford - Big Data Institute, University of Oxford - Big Data Institute, University of Oxford - Big Data Institute, University of Oxford - Big Data Institute, Imperial College London - Department of Mathematics, University of Oxford - Big Data Institute, Johns Hopkins University - Department of Pathology, Government of the United States of America - Division of AIDS, University of North Carolina (UNC) at Chapel Hill - Department of Medicine, Fred Hutchinson Cancer Research Center, Johns Hopkins University - Department of Pathology, Zambia AIDS Related Tuberculosis (ZAMBART), Imperial College London - Section of Virology, London School of Hygiene & Tropical Medicine - MRC International Statistics & Epidemiology Group and University of Oxford - Big Data Institute

University of California, Los Angeles (UCLA) - UCLA Center for Clinical AIDS Research and Education, Fred Hutchinson Cancer Research Center - Statistical Center for HIV/AIDS Research and Prevention, University of North Carolina (UNC) at Chapel Hill, Oswaldo Cruz Foundation (FIOCRUZ) - Evandro Chagas National Institute of Infectious Diseases (INI), University of KwaZulu-Natal - Centre for the AIDS Programme of Research in South Africa (CAPRISA), San Francisco Department of Health - Bridge HIV, George Washington University - Department of Epidemiology, University of North Carolina (UNC) at Chapel Hill - UNC-Project Malawi, Chris Hani Baragwanath Academic Hospital - Perinatal HIV Research Unit, Fred Hutchinson Cancer Research Center - Statistical Center for HIV/AIDS Research and Prevention, Fred Hutchinson Cancer Research Center - Statistical Center for HIV/AIDS Research and Prevention, Johns Hopkins University - School of Medicine, Johns Hopkins University - School of Medicine, Johns Hopkins University - Department of Pathology, University of California, Los Angeles (UCLA) - UCLA Center for Clinical AIDS Research and Education, Government of the United States of America - National Institute of Allergy and Infectious Diseases (NIAID), Government of the United States of America - National Institutes of Health (NIH), ViiV Healthcare Ltd., ViiV Healthcare Ltd., University of North Carolina (UNC) at Chapel Hill, FHI 360 and Johns Hopkins University - School of Medicine

Johns Hopkins University, Johns Hopkins University - School of Medicine, Johns Hopkins University - School of Medicine, Johns Hopkins University - School of Medicine, Fred Hutchinson Cancer Research Center - Vaccine and Infectious Disease Division, Johns Hopkins University - Department of Pathology, FHI 360, University of North Carolina (UNC) at Chapel Hill, National Academy of Sciences of Ukraine, University of Indonesia (UI) - Cipto Mangunkusumo National Hospital, University of North Carolina (UNC) at Chapel Hill - Department of Health Behavior, National Academy of Medical Sciences of Ukraine, University of Indonesia (UI) - Cipto Mangunkusumo National Hospital, University of North Carolina (UNC) at Chapel Hill, Ohio State University (OSU) and Johns Hopkins University - Department of Pathology