University of Oxford - Nuffield Department of Medicine, Università Vita-Salute San Raffaele - IRCCS San Raffaele Scientific Institute, University of Cambridge - Department of Genetics, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford - Nuffield Department of Medicine, European Bioinformatics Institute (EMBL-EBI), University of Oxford - Nuffield Department of Medicine, Imperial College London, Harvard University - Harvard Medical School, Università Vita-Salute San Raffaele - IRCCS San Raffaele Scientific Institute, Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER) - Tuberculosis Genomics Unit, Centers for Disease Control and Prevention (CDC), National Center for HIV/AIDS, Viral Hepatitis, STD, and TB Prevention, Division of Tuberculosis Elimination, National Health Laboratory Services (NHLS) - National Institute for Communicable Diseases, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, Foundation for Innovative New Diagnostics (FIND), Foundation for Innovative New Diagnostics (FIND), Foundation for Innovative New Diagnostics (FIND), Foundation for Innovative New Diagnostics (FIND), World Health Organization (WHO) - Global Tuberculosis Programme, World Health Organization (WHO) - Global Tuberculosis Programme, University of Oxford - Nuffield Department of Medicine, Independent, Independent, University of Oxford - Nuffield Department of Medicine, World Health Organization (WHO) - Global Tuberculosis Programme and University of California, San Diego (UCSD)

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University College London - Centre for Computational Science, University College London - Centre for Computational Science, University College London - Centre for Computational Science, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital and University College London - Centre for Computational Science

University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, Stellenbosch University, Faculty of Medicine and Health Sciences, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, SAMRC Centre, Centers for Disease Control and Prevention (CDC), National Center for HIV/AIDS, Viral Hepatitis, STD, and TB Prevention, Division of Tuberculosis Elimination, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, Centers for Disease Control and Prevention (CDC), National Center for HIV/AIDS, Viral Hepatitis, STD, and TB Prevention, Division of Tuberculosis Elimination, University of Oxford - Nuffield Department of Medicine and University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital

University of Oxford, University of Oxford, University of Oxford, University of Oxford, Hospital of Tropical Diseases - Oxford University Clinical Research Unit, Hospital of Tropical Diseases - Oxford University Clinical Research Unit, University of Oxford, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford - Nuffield Department of Medicine, Hospital of Tropical Diseases - Oxford University Clinical Research Unit, University of Oxford, University of Oxford, University of Oxford, University of Oxford, University of Oxford, Nuffield Department of Medicine, John Radcliffe Hospital, Hospital of Tropical Diseases - Oxford University Clinical Research Unit, Hospital of Tropical Diseases - Oxford University Clinical Research Unit, National Health Laboratory Services (NHLS) - National Institute for Communicable Diseases and University of Oxford