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Sameer Velnankar

European Bioinformatics Institute

Cambridge

United Kingdom

SCHOLARLY PAPERS

5

DOWNLOADS

265

TOTAL CITATIONS

2

Scholarly Papers (5)

1.

PDBe-KB Complexes: Enabling Functional Insight from Macromolecular Complexes in the PDB

Number of pages: 16 Posted: 06 Nov 2025
European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute and European Bioinformatics Institute
Downloads 88 (753,595)

Abstract:

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Macromolecular complexes, PDBe-KB, Data integration, protein, nucleic acid

2.

Alphafold Protein Structure Database and 3d-Beacons: New Data and Capabilities

Number of pages: 19 Posted: 03 Dec 2024
European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, European Bioinformatics Institute, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, Seoul National University, Seoul National University, European Bioinformatics Institute, affiliation not provided to SSRN and European Bioinformatics Institute
Downloads 61 (951,658)

Abstract:

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AlphaFold, foldseek, alphamissense, training, annotations

3.

IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank

Number of pages: 25 Posted: 15 Oct 2025
affiliation not provided to SSRN, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, affiliation not provided to SSRN, University of Southern California, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, University of Southern California, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, Technische Universität Berlin (TU Berlin) - Chair of Bioanalytics, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Tata Institute of Fundamental Research (TIFR), Tata Institute of Fundamental Research (TIFR), University of Southern California, University of Connecticut - Department of Molecular Biology and Biophysics, The University of Osaka, European Bioinformatics Institute, European Bioinformatics Institute, Rutgers, The State University of New Jersey - Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank and UC, San Francisco - Dept. of Biopharmaceutical Sciences and Pharmaceutical Chemistry
Downloads 57 (989,921)

Abstract:

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Integrative modeling, Protein Data Bank (PDB), Small-angle X-ray scattering (SAXS), Crosslinking mass spectrometry (crosslinking-MS), Three-dimensional cryo-electron microscopy (3DEM)

4.

Pdb-Ihm: A System for Deposition, Curation, Validation, and Dissemination of Integrative Structures

Number of pages: 15 Posted: 26 Nov 2024
Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, affiliation not provided to SSRN, affiliation not provided to SSRN, University of Southern California, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, University of Southern California, University of Southern California, affiliation not provided to SSRN, University of Connecticut - Department of Molecular Biology and Biophysics, The University of Osaka, European Bioinformatics Institute, European Bioinformatics Institute, University of Southern California, affiliation not provided to SSRN, Rutgers, The State University of New Jersey - Department of Chemistry and Chemical Biology and UC, San Francisco - Dept. of Biopharmaceutical Sciences and Pharmaceutical Chemistry
Downloads 39 (1,196,171)
Citation 1

Abstract:

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PDB, PDBx/mmCIF, integrative modeling, IHMCIF, structure validation, PDB-Dev, PDB-IHM

5.

Restraint Validation of Biomolecular Structures Determined By NMR in the Protein Data Bank

Number of pages: 35 Posted: 14 Jul 2023
University of Connecticut - Biological Magnetic Resonance Data Bank, University of Leicester, Rensselaer Polytechnic Institute (RPI) - Department of Chemistry and Chemical Biology, The University of Osaka, European Bioinformatics Institute, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rensselaer Polytechnic Institute (RPI) - Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, European Bioinformatics Institute, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Institut Pasteur, Foundation for the National Institutes of Health - National Institute of Diabetes and Digestive and Kidney Diseases, European Bioinformatics Institute, European Bioinformatics Institute, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, The University of Osaka, University of Connecticut - Department of Molecular Biology and Biophysics, Rutgers University, Piscataway - Department of Biochemistry and Molecular Biology, University of Leicester and Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank
Downloads 20 (1,448,301)
Citation 1

Abstract:

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Nuclear Magnetic Resonance, Structure validation, NMR restraint validation, wwPDB, validation, NOE restraints, Dihedral-angle restraints, Chemical shift validation, NMR structure determination, wwPDB validation report, Distance restraints