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Brinda Vallat

Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank

Piscataway, NJ 08854

United States

SCHOLARLY PAPERS

4

DOWNLOADS

243

TOTAL CITATIONS

1

Scholarly Papers (4)

1.

Rcsb-Api: Python Toolkit for Streamlining Access to Rcsb Protein Data Bank Apis

Number of pages: 16 Posted: 18 Nov 2024
Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank and Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank
Downloads 100 (689,572)

Abstract:

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RCSB Protein Data Bank, RCSB.org, structural biology, bioinformatics, FAIR principles

2.

IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank

Number of pages: 25 Posted: 15 Oct 2025
affiliation not provided to SSRN, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, affiliation not provided to SSRN, University of Southern California, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, University of Southern California, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, Technische Universität Berlin (TU Berlin) - Chair of Bioanalytics, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, Tata Institute of Fundamental Research (TIFR), Tata Institute of Fundamental Research (TIFR), University of Southern California, University of Connecticut - Department of Molecular Biology and Biophysics, The University of Osaka, European Bioinformatics Institute, European Bioinformatics Institute, Rutgers, The State University of New Jersey - Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank and UC, San Francisco - Dept. of Biopharmaceutical Sciences and Pharmaceutical Chemistry
Downloads 57 (989,921)

Abstract:

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Integrative modeling, Protein Data Bank (PDB), Small-angle X-ray scattering (SAXS), Crosslinking mass spectrometry (crosslinking-MS), Three-dimensional cryo-electron microscopy (3DEM)

3.

ModelCIF update: Supporting Emerging Classes of Computational Macromolecular Models

Number of pages: 15 Posted: 06 Nov 2025
Swiss Institute of Bioinformatics, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, affiliation not provided to SSRN, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, affiliation not provided to SSRN, University of Basel - Biozentrum, Swiss Institute of Bioinformatics, affiliation not provided to SSRN, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, UC, San Francisco - Dept. of Biopharmaceutical Sciences and Pharmaceutical Chemistry, affiliation not provided to SSRN, Universita della Svizzera Italiana (USI Lugano) - Institute for Research in Biomedicine, École Polytechnique Fédérale de Lausanne (EPFL) - Institute of Bioengineering and University of Basel - Biozentrum
Downloads 47 (1,097,529)

Abstract:

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data standard, macromolecular structure prediction, protein complexes, conformational states, protein design

4.

Pdb-Ihm: A System for Deposition, Curation, Validation, and Dissemination of Integrative Structures

Number of pages: 15 Posted: 26 Nov 2024
Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, affiliation not provided to SSRN, affiliation not provided to SSRN, University of Southern California, Rutgers, The State University of New Jersey - Research Collaboratory for Structural Bioinformatics Protein Data Bank, University of Southern California, University of Southern California, affiliation not provided to SSRN, University of Connecticut - Department of Molecular Biology and Biophysics, The University of Osaka, European Bioinformatics Institute, European Bioinformatics Institute, University of Southern California, affiliation not provided to SSRN, Rutgers, The State University of New Jersey - Department of Chemistry and Chemical Biology and UC, San Francisco - Dept. of Biopharmaceutical Sciences and Pharmaceutical Chemistry
Downloads 39 (1,196,171)
Citation 1

Abstract:

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PDB, PDBx/mmCIF, integrative modeling, IHMCIF, structure validation, PDB-Dev, PDB-IHM